Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CD74P04233 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.17■□□□□ 0.18
CD74P04233 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.17■□□□□ 0.18
CD74P04233 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CD74P04233 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
CD74P04233 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.17■□□□□ 0.18
CD74P04233 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CD74P04233 AC067852.2-201ENST00000590513 2313 ntBASIC16.17■□□□□ 0.18
CD74P04233 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CD74P04233 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CD74P04233 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.17■□□□□ 0.18
CD74P04233 FEM1AP3-201ENST00000403722 1741 ntBASIC16.16■□□□□ 0.18
CD74P04233 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CD74P04233 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CD74P04233 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.16■□□□□ 0.18
CD74P04233 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.16■□□□□ 0.18
CD74P04233 HYI-206ENST00000372434 1025 ntTSL 5 BASIC16.16■□□□□ 0.18
CD74P04233 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
CD74P04233 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.16■□□□□ 0.18
CD74P04233 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.16■□□□□ 0.18
CD74P04233 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.16■□□□□ 0.18
CD74P04233 C2orf69P4-201ENST00000565394 541 ntBASIC16.16■□□□□ 0.18
CD74P04233 AC142381.2-201ENST00000566120 298 ntBASIC16.16■□□□□ 0.18
CD74P04233 CYP2T3P-201ENST00000601990 817 ntBASIC16.16■□□□□ 0.18
CD74P04233 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC16.16■□□□□ 0.18
CD74P04233 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.16■□□□□ 0.18
CD74P04233 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 AL162741.1-201ENST00000565563 1558 ntBASIC16.16■□□□□ 0.18
CD74P04233 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CD74P04233 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.16■□□□□ 0.18
CD74P04233 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CD74P04233 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.15■□□□□ 0.18
CD74P04233 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.15■□□□□ 0.18
CD74P04233 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
CD74P04233 AC073592.3-201ENST00000625118 1834 ntBASIC16.15■□□□□ 0.18
CD74P04233 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CD74P04233 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CD74P04233 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC16.15■□□□□ 0.18
CD74P04233 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.15■□□□□ 0.18
CD74P04233 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.15■□□□□ 0.18
CD74P04233 KRT18P61-201ENST00000585825 1298 ntBASIC16.15■□□□□ 0.18
CD74P04233 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CD74P04233 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.15■□□□□ 0.18
CD74P04233 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CD74P04233 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
CD74P04233 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CD74P04233 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
CD74P04233 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CD74P04233 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.14■□□□□ 0.17
CD74P04233 NALT1-201ENST00000429224 738 ntTSL 5 BASIC16.14■□□□□ 0.17
CD74P04233 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.14■□□□□ 0.17
CD74P04233 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 RAB43-208ENST00000615093 783 ntTSL 5 BASIC16.14■□□□□ 0.17
CD74P04233 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.14■□□□□ 0.17
CD74P04233 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CD74P04233 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.14■□□□□ 0.17
CD74P04233 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CD74P04233 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.13■□□□□ 0.17
CD74P04233 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CD74P04233 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
CD74P04233 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms