Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SHOX2O60902 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 TSPY26P-201ENST00000476365 1326 ntBASIC19.28■□□□□ 0.68
SHOX2O60902 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.28■□□□□ 0.68
SHOX2O60902 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.28■□□□□ 0.68
SHOX2O60902 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.28■□□□□ 0.68
SHOX2O60902 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.28■□□□□ 0.68
SHOX2O60902 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.28■□□□□ 0.68
SHOX2O60902 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.28■□□□□ 0.68
SHOX2O60902 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.28■□□□□ 0.68
SHOX2O60902 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 AC243732.1-201ENST00000612648 864 ntBASIC19.28■□□□□ 0.68
SHOX2O60902 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SHOX2O60902 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.28■□□□□ 0.68
SHOX2O60902 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
SHOX2O60902 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SHOX2O60902 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHOX2O60902 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOX2O60902 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.27■□□□□ 0.68
SHOX2O60902 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SHOX2O60902 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOX2O60902 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.27■□□□□ 0.68
SHOX2O60902 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.27■□□□□ 0.68
SHOX2O60902 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOX2O60902 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.27■□□□□ 0.68
SHOX2O60902 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.27■□□□□ 0.68
SHOX2O60902 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHOX2O60902 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.27■□□□□ 0.68
SHOX2O60902 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.27■□□□□ 0.68
SHOX2O60902 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
SHOX2O60902 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.27■□□□□ 0.68
SHOX2O60902 AC083906.6-201ENST00000641366 219 ntBASIC19.27■□□□□ 0.68
SHOX2O60902 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOX2O60902 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.27■□□□□ 0.68
SHOX2O60902 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOX2O60902 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOX2O60902 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOX2O60902 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOX2O60902 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOX2O60902 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.27■□□□□ 0.67
SHOX2O60902 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
SHOX2O60902 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SHOX2O60902 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHOX2O60902 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHOX2O60902 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SHOX2O60902 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SHOX2O60902 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.26■□□□□ 0.67
SHOX2O60902 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.26■□□□□ 0.67
SHOX2O60902 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.26■□□□□ 0.67
SHOX2O60902 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SHOX2O60902 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
SHOX2O60902 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.26■□□□□ 0.67
SHOX2O60902 AL358852.1-201ENST00000623174 1268 ntBASIC19.26■□□□□ 0.67
SHOX2O60902 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SHOX2O60902 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.26■□□□□ 0.67
SHOX2O60902 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHOX2O60902 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SHOX2O60902 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
SHOX2O60902 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.25■□□□□ 0.67
SHOX2O60902 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SHOX2O60902 AC096631.2-201ENST00000436136 790 ntBASIC19.25■□□□□ 0.67
SHOX2O60902 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.25■□□□□ 0.67
SHOX2O60902 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.25■□□□□ 0.67
SHOX2O60902 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.25■□□□□ 0.67
SHOX2O60902 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.25■□□□□ 0.67
SHOX2O60902 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.25■□□□□ 0.67
SHOX2O60902 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.25■□□□□ 0.67
SHOX2O60902 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
SHOX2O60902 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms