Protein–RNA interactions for Protein: O00148

DDX39A, ATP-dependent RNA helicase DDX39A, humanhuman

Known RBP Predictions only

Length 427 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39AO00148 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX39AO00148 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.66■■□□□ 1.06
DDX39AO00148 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
DDX39AO00148 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX39AO00148 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX39AO00148 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
DDX39AO00148 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.65■■□□□ 1.06
DDX39AO00148 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC21.65■■□□□ 1.06
DDX39AO00148 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.65■■□□□ 1.06
DDX39AO00148 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.65■■□□□ 1.06
DDX39AO00148 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.65■■□□□ 1.06
DDX39AO00148 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
DDX39AO00148 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.65■■□□□ 1.06
DDX39AO00148 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.65■■□□□ 1.06
DDX39AO00148 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.65■■□□□ 1.06
DDX39AO00148 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX39AO00148 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.06
DDX39AO00148 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
DDX39AO00148 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
DDX39AO00148 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.64■■□□□ 1.06
DDX39AO00148 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.64■■□□□ 1.05
DDX39AO00148 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX39AO00148 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX39AO00148 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.64■■□□□ 1.05
DDX39AO00148 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
DDX39AO00148 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX39AO00148 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.64■■□□□ 1.05
DDX39AO00148 AC145285.6-201ENST00000604632 637 ntBASIC21.64■■□□□ 1.05
DDX39AO00148 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
DDX39AO00148 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
DDX39AO00148 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX39AO00148 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.64■■□□□ 1.05
DDX39AO00148 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX39AO00148 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX39AO00148 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
DDX39AO00148 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.64■■□□□ 1.05
DDX39AO00148 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX39AO00148 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
DDX39AO00148 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 INGX-201ENST00000359239 846 ntBASIC21.63■■□□□ 1.05
DDX39AO00148 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
DDX39AO00148 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.63■■□□□ 1.05
DDX39AO00148 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX39AO00148 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX39AO00148 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
DDX39AO00148 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.63■■□□□ 1.05
DDX39AO00148 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX39AO00148 C2orf69P3-201ENST00000565542 1120 ntBASIC21.63■■□□□ 1.05
DDX39AO00148 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.63■■□□□ 1.05
DDX39AO00148 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
DDX39AO00148 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.63■■□□□ 1.05
DDX39AO00148 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX39AO00148 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.63■■□□□ 1.05
DDX39AO00148 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
DDX39AO00148 AC096733.2-201ENST00000609937 1394 ntBASIC21.62■■□□□ 1.05
DDX39AO00148 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
DDX39AO00148 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
DDX39AO00148 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.62■■□□□ 1.05
DDX39AO00148 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.62■■□□□ 1.05
DDX39AO00148 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC21.62■■□□□ 1.05
DDX39AO00148 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.62■■□□□ 1.05
DDX39AO00148 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.62■■□□□ 1.05
DDX39AO00148 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.62■■□□□ 1.05
DDX39AO00148 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX39AO00148 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.62■■□□□ 1.05
DDX39AO00148 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
DDX39AO00148 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms