Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 POM121L13P-201ENST00000422362 380 ntBASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC233702.5-201ENST00000584107 538 ntBASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC069544.1-201ENST00000609399 999 ntBASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC25.89■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC25.89■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC25.89■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC25.89■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC25.89■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC25.89■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 RN7SL471P-201ENST00000580476 299 ntBASIC25.89■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC25.89■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 TOLLIP-AS1-201ENST00000530897 939 ntBASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 MIR4785-201ENST00000585005 73 ntBASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SDHAP1-207ENST00000440850 2000 ntBASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC25.88■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms