Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 MTCO1P42-201ENST00000457379 726 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 HMGN1P18-201ENST00000457642 277 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AC004801.2-202ENST00000463559 283 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 CKS1BP1-201ENST00000555221 240 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 TGIF1P1-201ENST00000558095 802 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 CR381653.2-201ENST00000624041 768 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 MIR30E-201ENST00000362104 92 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 SNORD56.3-201ENST00000363507 71 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 RNU1-89P-201ENST00000384592 164 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 MORF4L1P6-201ENST00000418771 268 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 HMGB3P11-201ENST00000440127 604 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 OR5H3P-201ENST00000502817 919 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 U4.3-201ENST00000621047 82 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 RPL21P75-201ENST00000396599 483 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 RPL21P1-201ENST00000399532 476 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 RPL21P28-201ENST00000401418 483 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AL592114.1-201ENST00000403842 483 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AL023284.1-201ENST00000403956 276 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AC011816.1-201ENST00000441346 546 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 RPL21P16-201ENST00000495531 483 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 MTHFD2P4-201ENST00000515074 1025 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 RN7SKP282-201ENST00000516824 299 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AC090695.1-201ENST00000561269 1222 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 SNORA26.9-201ENST00000391322 122 ntBASIC2.48□□□□□ -2.01
VPS13AQ96RL7 AC068587.2-201ENST00000478386 781 ntBASIC2.48□□□□□ -2.01
VPS13AQ96RL7 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 RNA5SP88-201ENST00000365560 109 ntBASIC2.48□□□□□ -2.01
VPS13AQ96RL7 RPS7P13-201ENST00000413955 498 ntBASIC2.48□□□□□ -2.01
VPS13AQ96RL7 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 RNU6-1053P-201ENST00000515930 101 ntBASIC2.48□□□□□ -2.01
VPS13AQ96RL7 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 AL359821.1-201ENST00000605519 182 ntBASIC2.48□□□□□ -2.01
VPS13AQ96RL7 AC006111.3-201ENST00000622137 383 ntBASIC2.48□□□□□ -2.01
VPS13AQ96RL7 AL359893.1-201ENST00000447628 1580 ntBASIC2.48□□□□□ -2.01
VPS13AQ96RL7 AL079305.1-201ENST00000623159 3008 ntBASIC2.48□□□□□ -2.01
VPS13AQ96RL7 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
VPS13AQ96RL7 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 MTND5P28-201ENST00000438005 1594 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 RNU1-73P-201ENST00000383971 164 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 BTG3P1-201ENST00000435859 716 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AL354710.1-201ENST00000453641 246 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AP000942.1-201ENST00000463969 747 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AC141257.3-201ENST00000572906 215 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 ZNF861P-201ENST00000588126 639 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 RPP40P2-201ENST00000603596 712 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AC104237.2-201ENST00000612456 443 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AC083843.2-201ENST00000568248 6253 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 SNORD62.1-201ENST00000362541 86 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 U8.13-201ENST00000390842 128 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 BX679664.1-201ENST00000434429 253 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AC112220.1-201ENST00000434628 355 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 SNORA46-201ENST00000384762 135 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 RPL30P9-201ENST00000465586 330 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 RPL36AP51-201ENST00000487216 318 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 ARL2BPP6-201ENST00000512757 439 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AC096725.1-201ENST00000514266 313 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AC008507.1-201ENST00000587506 734 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AL583832.1-201ENST00000603227 784 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 AC110994.2-201ENST00000635481 492 ntBASIC2.47□□□□□ -2.01
VPS13AQ96RL7 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
VPS13AQ96RL7 GABPAP-201ENST00000419271 1356 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms