RNA–Protein interactions for RNA: ENST00000628962.1

VPS8-228, Transcript of VPS8, CORVET complex subunit, humanhuman

TSL 5 BASIC

Gene VPS8, Length 207 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-228ENST00000628962 AEBP2Q6ZN18 517 aaPredicted RBP24.85■■□□□ 1.57
VPS8-228ENST00000628962 CHIC1Q5VXU3 224 aa23.43■■□□□ 1.34
VPS8-228ENST00000628962 SENP3Q9H4L4 574 aaPredicted RBP21.2■□□□□ 0.98
VPS8-228ENST00000628962 PHF23Q9BUL5 403 aaPredicted RBP20.91■□□□□ 0.94
VPS8-228ENST00000628962 FOXD1Q16676 465 aa19.79■□□□□ 0.76
VPS8-228ENST00000628962 PLPPR3Q6T4P5 718 aa18.62■□□□□ 0.57
VPS8-228ENST00000628962 MSH5O43196 834 aa18.58■□□□□ 0.56
VPS8-228ENST00000628962 POTEDQ86YR6 584 aa18.44■□□□□ 0.54
VPS8-228ENST00000628962 PIAS4Q8N2W9 510 aaPredicted RBP18.43■□□□□ 0.54
VPS8-228ENST00000628962 PPP6R1Q9UPN7 881 aa18.39■□□□□ 0.53
VPS8-228ENST00000628962 ADRA2BP18089 450 aa18.29■□□□□ 0.52
VPS8-228ENST00000628962 MAPK8IP2Q13387 824 aaPredicted RBP16.86■□□□□ 0.29
VPS8-228ENST00000628962 DMRT2Q9Y5R5 561 aa16.8■□□□□ 0.28
VPS8-228ENST00000628962 SCAF1Q9H7N4 1312 aaKnown RBP16.71■□□□□ 0.27
VPS8-228ENST00000628962 PPP4R3CPQ6ZMV5 832 aa16.3■□□□□ 0.2
VPS8-228ENST00000628962 HOXD11P31277 338 aaPredicted RBP16.13■□□□□ 0.17
VPS8-228ENST00000628962 DCAF8L1A6NGE4 600 aa16.05■□□□□ 0.16
VPS8-228ENST00000628962 CNKSR2Q8WXI2 1034 aa16.03■□□□□ 0.16
VPS8-228ENST00000628962 CACNB1Q02641 598 aaPredicted RBP16.02■□□□□ 0.16
VPS8-228ENST00000628962 RNF216Q9NWF9 866 aaPredicted RBP15.94■□□□□ 0.14
VPS8-228ENST00000628962 RNF39Q9H2S5 420 aa15.85■□□□□ 0.13
VPS8-228ENST00000628962 DNAJC5BQ9UF47 199 aa15.62■□□□□ 0.09
VPS8-228ENST00000628962 C1QBPQ07021 282 aaKnown RBP15.61■□□□□ 0.09
VPS8-228ENST00000628962 NCBP3Q53F19 620 aaKnown RBP15.59■□□□□ 0.09
VPS8-228ENST00000628962 NPM3O75607 178 aaKnown RBP15.41■□□□□ 0.06
VPS8-228ENST00000628962 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.31■□□□□ 0.04
VPS8-228ENST00000628962 U3KPZ7 1027 aaPredicted RBP15.01□□□□□ -0.01
VPS8-228ENST00000628962 KCNA4P22459 653 aa14.94□□□□□ -0.02
VPS8-228ENST00000628962 SPINK5Q9NQ38 1064 aaPredicted RBP14.84□□□□□ -0.03
VPS8-228ENST00000628962 DSG3P32926 999 aa14.79□□□□□ -0.04
VPS8-228ENST00000628962 CAPN15O75808 1086 aa14.78□□□□□ -0.04
VPS8-228ENST00000628962 SLC4A2P04920 1241 aa14.77□□□□□ -0.05
VPS8-228ENST00000628962 APLP2Q06481 763 aa14.54□□□□□ -0.08
VPS8-228ENST00000628962 TRHP20396 242 aaPredicted RBP14.51□□□□□ -0.09
VPS8-228ENST00000628962 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.49□□□□□ -0.09
VPS8-228ENST00000628962 HNRNPUL2Q1KMD3 747 aaKnown RBP14.49□□□□□ -0.09
VPS8-228ENST00000628962 ZNF219Q9P2Y4 722 aaPredicted RBP14.49□□□□□ -0.09
VPS8-228ENST00000628962 ABCB7O75027 752 aa14.43□□□□□ -0.1
VPS8-228ENST00000628962 POTEHQ6S545 545 aa14.41□□□□□ -0.1
VPS8-228ENST00000628962 SAMD1Q6SPF0 538 aaPredicted RBP14.41□□□□□ -0.1
VPS8-228ENST00000628962 MYCNP04198 464 aaPredicted RBP14.24□□□□□ -0.13
VPS8-228ENST00000628962 POLA2Q14181 598 aa14.09□□□□□ -0.15
VPS8-228ENST00000628962 RBM42Q9BTD8 480 aaKnown RBP14.09□□□□□ -0.15
VPS8-228ENST00000628962 SLC4A1APQ9BWU0 796 aaKnown RBP14.05□□□□□ -0.16
VPS8-228ENST00000628962 FOXD4L1Q9NU39 408 aa14.01□□□□□ -0.17
VPS8-228ENST00000628962 ATF5Q9Y2D1 282 aaPredicted RBP13.94□□□□□ -0.18
VPS8-228ENST00000628962 CHRDL2Q6WN34 429 aa13.85□□□□□ -0.19
VPS8-228ENST00000628962 ZBTB12Q9Y330 459 aaPredicted RBP13.79□□□□□ -0.2
VPS8-228ENST00000628962 ZBTB22O15209 634 aa13.75□□□□□ -0.21
VPS8-228ENST00000628962 AKT1S1Q96B36 256 aa13.74□□□□□ -0.21
VPS8-228ENST00000628962 OSCARQ8IYS5 282 aa13.66□□□□□ -0.22
VPS8-228ENST00000628962 REM2Q8IYK8 340 aaPredicted RBP13.61□□□□□ -0.23
VPS8-228ENST00000628962 ATXN8OSP0DMR3 200 aa13.6□□□□□ -0.23
VPS8-228ENST00000628962 PIP4P2Q8N4L2 257 aa13.49□□□□□ -0.25
VPS8-228ENST00000628962 PITPNM1O00562 1244 aa13.46□□□□□ -0.25
VPS8-228ENST00000628962 SP7Q8TDD2 431 aaPredicted RBP13.42□□□□□ -0.26
VPS8-228ENST00000628962 FXR2P51116 673 aaKnown RBP eCLIP13.4□□□□□ -0.26
VPS8-228ENST00000628962 FBLN2P98095 1184 aa13.37□□□□□ -0.27
VPS8-228ENST00000628962 SPDYE2BA6NHP3 402 aa13.36□□□□□ -0.27
VPS8-228ENST00000628962 SPDYE6P0CI01 402 aa13.36□□□□□ -0.27
VPS8-228ENST00000628962 SPDYE2Q495Y8 402 aa13.36□□□□□ -0.27
VPS8-228ENST00000628962 MKRN4PQ13434 485 aaPredicted RBP13.29□□□□□ -0.28
VPS8-228ENST00000628962 HAX1O00165 279 aa13.27□□□□□ -0.29
VPS8-228ENST00000628962 SSUH2Q9Y2M2 353 aa13.19□□□□□ -0.3
VPS8-228ENST00000628962 SPDYE1Q8NFV5 336 aaPredicted RBP13.17□□□□□ -0.3
VPS8-228ENST00000628962 ZNF692Q9BU19 519 aaPredicted RBP13.16□□□□□ -0.3
VPS8-228ENST00000628962 EVX2Q03828 476 aa13.14□□□□□ -0.31
VPS8-228ENST00000628962 CLEC11AQ9Y240 323 aa13.13□□□□□ -0.31
VPS8-228ENST00000628962 PRKAR2AP13861 404 aaKnown RBP13.11□□□□□ -0.31
VPS8-228ENST00000628962 C19orf67A6NJJ6 358 aa12.98□□□□□ -0.33
VPS8-228ENST00000628962 PABPN1Q86U42 306 aaKnown RBP eCLIP12.97□□□□□ -0.33
VPS8-228ENST00000628962 CSRNP3Q8WYN3 585 aa12.96□□□□□ -0.33
VPS8-228ENST00000628962 CHADLQ6NUI6 762 aa12.92□□□□□ -0.34
VPS8-228ENST00000628962 PRR29P0C7W0 189 aa12.9□□□□□ -0.34
VPS8-228ENST00000628962 GABBR2O75899 941 aa12.82□□□□□ -0.36
VPS8-228ENST00000628962 FARP1Q9Y4F1 1045 aaPredicted RBP12.72□□□□□ -0.37
VPS8-228ENST00000628962 CD44P16070 742 aaKnown RBP12.68□□□□□ -0.38
VPS8-228ENST00000628962 EHMT2Q96KQ7 1210 aa12.64□□□□□ -0.39
VPS8-228ENST00000628962 LHX8Q68G74 356 aa12.59□□□□□ -0.39
VPS8-228ENST00000628962 POTEIP0CG38 1075 aa12.57□□□□□ -0.4
VPS8-228ENST00000628962 CREBZFQ9NS37 354 aa12.57□□□□□ -0.4
VPS8-228ENST00000628962 STAG3Q9UJ98 1225 aa12.57□□□□□ -0.4
VPS8-228ENST00000628962 CLCN6P51797 869 aa12.56□□□□□ -0.4
VPS8-228ENST00000628962 SPDYE4A6NLX3 237 aa12.55□□□□□ -0.4
VPS8-228ENST00000628962 ZNF579Q8NAF0 562 aaKnown RBP12.49□□□□□ -0.41
VPS8-228ENST00000628962 ZRANB1Q9UGI0 708 aa12.47□□□□□ -0.41
VPS8-228ENST00000628962 DCBLD2Q96PD2 775 aa12.4□□□□□ -0.42
VPS8-228ENST00000628962 MNX1P50219 401 aaPredicted RBP12.36□□□□□ -0.43
VPS8-228ENST00000628962 GALR2O43603 387 aaPredicted RBP12.35□□□□□ -0.43
VPS8-228ENST00000628962 PAK3O75914 559 aaPredicted RBP12.31□□□□□ -0.44
VPS8-228ENST00000628962 NPM1P06748 294 aaKnown RBP eCLIP12.3□□□□□ -0.44
VPS8-228ENST00000628962 PHF12Q96QT6 1004 aa12.28□□□□□ -0.44
VPS8-228ENST00000628962 PROM2Q8N271 834 aa12.27□□□□□ -0.45
VPS8-228ENST00000628962 POTEB2H3BUK9 544 aa12.15□□□□□ -0.46
VPS8-228ENST00000628962 PELP1Q8IZL8 1130 aaKnown RBP12.14□□□□□ -0.47
VPS8-228ENST00000628962 OTUD5Q96G74 571 aa12.13□□□□□ -0.47
VPS8-228ENST00000628962 MS4A3Q96HJ5 214 aa12.12□□□□□ -0.47
VPS8-228ENST00000628962 ASTLQ6HA08 431 aaPredicted RBP12.09□□□□□ -0.47
VPS8-228ENST00000628962 TSPYL2Q9H2G4 693 aaPredicted RBP12.07□□□□□ -0.48
VPS8-228ENST00000628962 ATMINO43313 823 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms