RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 AEBP2Q6ZN18 517 aaPredicted RBP24.06■■□□□ 1.44
CKS1BP1-201ENST00000555221 CHIC1Q5VXU3 224 aa24.02■■□□□ 1.44
CKS1BP1-201ENST00000555221 PHF23Q9BUL5 403 aaPredicted RBP21.12■□□□□ 0.97
CKS1BP1-201ENST00000555221 SENP3Q9H4L4 574 aaPredicted RBP20.45■□□□□ 0.86
CKS1BP1-201ENST00000555221 PLPPR3Q6T4P5 718 aa19.74■□□□□ 0.75
CKS1BP1-201ENST00000555221 FOXD1Q16676 465 aa18.86■□□□□ 0.61
CKS1BP1-201ENST00000555221 ADRA2BP18089 450 aa18.5■□□□□ 0.55
CKS1BP1-201ENST00000555221 PPP6R1Q9UPN7 881 aa18.47■□□□□ 0.55
CKS1BP1-201ENST00000555221 PIAS4Q8N2W9 510 aaPredicted RBP17.93■□□□□ 0.46
CKS1BP1-201ENST00000555221 KCNA4P22459 653 aa17.51■□□□□ 0.39
CKS1BP1-201ENST00000555221 PPP4R3CPQ6ZMV5 832 aa17.42■□□□□ 0.38
CKS1BP1-201ENST00000555221 MSH5O43196 834 aa17.29■□□□□ 0.36
CKS1BP1-201ENST00000555221 NCBP3Q53F19 620 aaKnown RBP17.17■□□□□ 0.34
CKS1BP1-201ENST00000555221 SCAF1Q9H7N4 1312 aaKnown RBP17.04■□□□□ 0.32
CKS1BP1-201ENST00000555221 CNKSR2Q8WXI2 1034 aa16.86■□□□□ 0.29
CKS1BP1-201ENST00000555221 NPM3O75607 178 aaKnown RBP16.84■□□□□ 0.29
CKS1BP1-201ENST00000555221 EHMT2Q96KQ7 1210 aa16.82■□□□□ 0.28
CKS1BP1-201ENST00000555221 SLC4A1APQ9BWU0 796 aaKnown RBP16.81■□□□□ 0.28
CKS1BP1-201ENST00000555221 MAPK8IP2Q13387 824 aaPredicted RBP16.62■□□□□ 0.25
CKS1BP1-201ENST00000555221 RNF216Q9NWF9 866 aaPredicted RBP16.42■□□□□ 0.22
CKS1BP1-201ENST00000555221 CSRNP3Q8WYN3 585 aa16.4■□□□□ 0.22
CKS1BP1-201ENST00000555221 DMRT2Q9Y5R5 561 aa16.37■□□□□ 0.21
CKS1BP1-201ENST00000555221 DNAJC5BQ9UF47 199 aa16.35■□□□□ 0.21
CKS1BP1-201ENST00000555221 HOXD11P31277 338 aaPredicted RBP16.22■□□□□ 0.19
CKS1BP1-201ENST00000555221 ZBTB22O15209 634 aa16.09■□□□□ 0.17
CKS1BP1-201ENST00000555221 FOXD4L1Q9NU39 408 aa16.04■□□□□ 0.16
CKS1BP1-201ENST00000555221 SLC4A2P04920 1241 aa15.77■□□□□ 0.12
CKS1BP1-201ENST00000555221 DCAF8L1A6NGE4 600 aa15.63■□□□□ 0.09
CKS1BP1-201ENST00000555221 MYCNP04198 464 aaPredicted RBP15.6■□□□□ 0.09
CKS1BP1-201ENST00000555221 ATXN8OSP0DMR3 200 aa15.47■□□□□ 0.07
CKS1BP1-201ENST00000555221 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.47■□□□□ 0.07
CKS1BP1-201ENST00000555221 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.29■□□□□ 0.04
CKS1BP1-201ENST00000555221 HNRNPUL2Q1KMD3 747 aaKnown RBP15.29■□□□□ 0.04
CKS1BP1-201ENST00000555221 SAMD1Q6SPF0 538 aaPredicted RBP15.24■□□□□ 0.03
CKS1BP1-201ENST00000555221 U3KPZ7 1027 aaPredicted RBP15.23■□□□□ 0.03
CKS1BP1-201ENST00000555221 APLP2Q06481 763 aa15.06■□□□□ 0
CKS1BP1-201ENST00000555221 ATF5Q9Y2D1 282 aaPredicted RBP15.05■□□□□ -0
CKS1BP1-201ENST00000555221 POTEDQ86YR6 584 aa14.86□□□□□ -0.03
CKS1BP1-201ENST00000555221 ZNF219Q9P2Y4 722 aaPredicted RBP14.84□□□□□ -0.03
CKS1BP1-201ENST00000555221 FKBP8Q14318 412 aa14.83□□□□□ -0.04
CKS1BP1-201ENST00000555221 RNF39Q9H2S5 420 aa14.81□□□□□ -0.04
CKS1BP1-201ENST00000555221 C1QBPQ07021 282 aaKnown RBP14.7□□□□□ -0.06
CKS1BP1-201ENST00000555221 SPINK5Q9NQ38 1064 aaPredicted RBP14.65□□□□□ -0.06
CKS1BP1-201ENST00000555221 TRHP20396 242 aaPredicted RBP14.64□□□□□ -0.07
CKS1BP1-201ENST00000555221 CAPN15O75808 1086 aa14.62□□□□□ -0.07
CKS1BP1-201ENST00000555221 POLA2Q14181 598 aa14.52□□□□□ -0.09
CKS1BP1-201ENST00000555221 FBLN2P98095 1184 aa14.51□□□□□ -0.09
CKS1BP1-201ENST00000555221 MKRN4PQ13434 485 aaPredicted RBP14.45□□□□□ -0.1
CKS1BP1-201ENST00000555221 SPDYE4A6NLX3 237 aa14.4□□□□□ -0.1
CKS1BP1-201ENST00000555221 ZBTB12Q9Y330 459 aaPredicted RBP14.4□□□□□ -0.1
CKS1BP1-201ENST00000555221 AMER1Q5JTC6 1135 aaPredicted RBP14.38□□□□□ -0.11
CKS1BP1-201ENST00000555221 ABCB7O75027 752 aa14.34□□□□□ -0.11
CKS1BP1-201ENST00000555221 RTN4Q9NQC3 1192 aaKnown RBP14.27□□□□□ -0.13
CKS1BP1-201ENST00000555221 FBXO3Q9UK99 471 aa14.25□□□□□ -0.13
CKS1BP1-201ENST00000555221 DSG3P32926 999 aa14.24□□□□□ -0.13
CKS1BP1-201ENST00000555221 PROM2Q8N271 834 aa14.22□□□□□ -0.13
CKS1BP1-201ENST00000555221 CACNB1Q02641 598 aaPredicted RBP14.1□□□□□ -0.15
CKS1BP1-201ENST00000555221 SPDYE2BA6NHP3 402 aa14.01□□□□□ -0.17
CKS1BP1-201ENST00000555221 SPDYE6P0CI01 402 aa14.01□□□□□ -0.17
CKS1BP1-201ENST00000555221 SPDYE2Q495Y8 402 aa14.01□□□□□ -0.17
CKS1BP1-201ENST00000555221 VASPP50552 380 aaPredicted RBP14□□□□□ -0.17
CKS1BP1-201ENST00000555221 ZNF692Q9BU19 519 aaPredicted RBP14□□□□□ -0.17
CKS1BP1-201ENST00000555221 OSCARQ8IYS5 282 aa13.99□□□□□ -0.17
CKS1BP1-201ENST00000555221 SSUH2Q9Y2M2 353 aa13.91□□□□□ -0.18
CKS1BP1-201ENST00000555221 PABPN1Q86U42 306 aaKnown RBP eCLIP13.82□□□□□ -0.2
CKS1BP1-201ENST00000555221 STAG3Q9UJ98 1225 aa13.82□□□□□ -0.2
CKS1BP1-201ENST00000555221 IFNLR1Q8IU57 520 aaPredicted RBP13.8□□□□□ -0.2
CKS1BP1-201ENST00000555221 SLC24A1O60721 1099 aa13.69□□□□□ -0.22
CKS1BP1-201ENST00000555221 KLHL34Q8N239 644 aa13.66□□□□□ -0.22
CKS1BP1-201ENST00000555221 PLCD3Q8N3E9 789 aa13.65□□□□□ -0.22
CKS1BP1-201ENST00000555221 RBM42Q9BTD8 480 aaKnown RBP13.64□□□□□ -0.23
CKS1BP1-201ENST00000555221 MIER1Q8N108 512 aa13.61□□□□□ -0.23
CKS1BP1-201ENST00000555221 SPOCK2Q92563 424 aa13.61□□□□□ -0.23
CKS1BP1-201ENST00000555221 PLEKHG5O94827 1062 aa13.58□□□□□ -0.24
CKS1BP1-201ENST00000555221 AKT1S1Q96B36 256 aa13.54□□□□□ -0.24
CKS1BP1-201ENST00000555221 ZBTB47Q9UFB7 747 aaPredicted RBP13.53□□□□□ -0.24
CKS1BP1-201ENST00000555221 PKD2Q13563 968 aa13.51□□□□□ -0.25
CKS1BP1-201ENST00000555221 SPDYE1Q8NFV5 336 aaPredicted RBP13.49□□□□□ -0.25
CKS1BP1-201ENST00000555221 DCAF8L2P0C7V8 631 aa13.42□□□□□ -0.26
CKS1BP1-201ENST00000555221 ECM2O94769 699 aaPredicted RBP13.39□□□□□ -0.27
CKS1BP1-201ENST00000555221 REM2Q8IYK8 340 aaPredicted RBP13.37□□□□□ -0.27
CKS1BP1-201ENST00000555221 CLEC11AQ9Y240 323 aa13.36□□□□□ -0.27
CKS1BP1-201ENST00000555221 PRR29P0C7W0 189 aa13.33□□□□□ -0.28
CKS1BP1-201ENST00000555221 CIZ1Q9ULV3 898 aaPredicted RBP13.31□□□□□ -0.28
CKS1BP1-201ENST00000555221 TRIM41Q8WV44 630 aa13.27□□□□□ -0.29
CKS1BP1-201ENST00000555221 PLCB2Q00722 1185 aa13.26□□□□□ -0.29
CKS1BP1-201ENST00000555221 CREBZFQ9NS37 354 aa13.23□□□□□ -0.29
CKS1BP1-201ENST00000555221 GSE1Q14687 1217 aa13.22□□□□□ -0.29
CKS1BP1-201ENST00000555221 PITPNM1O00562 1244 aa13.21□□□□□ -0.29
CKS1BP1-201ENST00000555221 RGL2O15211 777 aa13.2□□□□□ -0.3
CKS1BP1-201ENST00000555221 NUBP1P53384 320 aa13.18□□□□□ -0.3
CKS1BP1-201ENST00000555221 MNX1P50219 401 aaPredicted RBP13.14□□□□□ -0.31
CKS1BP1-201ENST00000555221 BBXQ8WY36 941 aaPredicted RBP13.14□□□□□ -0.31
CKS1BP1-201ENST00000555221 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.14□□□□□ -0.31
CKS1BP1-201ENST00000555221 DCAF8Q5TAQ9 597 aa13.12□□□□□ -0.31
CKS1BP1-201ENST00000555221 FAM212AQ96EL1 285 aa13.12□□□□□ -0.31
CKS1BP1-201ENST00000555221 NPM1P06748 294 aaKnown RBP eCLIP13.1□□□□□ -0.31
CKS1BP1-201ENST00000555221 HAP1P54257 671 aaPredicted RBP13.06□□□□□ -0.32
CKS1BP1-201ENST00000555221 TAOK2Q9UL54 1235 aa13.03□□□□□ -0.32
CKS1BP1-201ENST00000555221 CHGAP10645 457 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 237.8 ms