Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
HOXD11P31277 PTPRB-201ENST00000261266 6110 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
HOXD11P31277 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
HOXD11P31277 STARD5-201ENST00000302824 4871 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
HOXD11P31277 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
HOXD11P31277 ZNF736-202ENST00000423484 7119 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
HOXD11P31277 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
HOXD11P31277 CCDC39-201ENST00000442201 3279 ntAPPRIS P1 TSL 2 BASIC8.12□□□□□ -1.11
HOXD11P31277 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 GAPVD1-219ENST00000495955 5309 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 OR2V2-203ENST00000641791 4428 ntAPPRIS P1 BASIC8.12□□□□□ -1.11
HOXD11P31277 TFDP2-212ENST00000486111 2360 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 HIP1-201ENST00000336926 8013 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 SNORA63D-201ENST00000364359 132 ntBASIC8.12□□□□□ -1.11
HOXD11P31277 Y_RNA.437-201ENST00000384113 113 ntBASIC8.12□□□□□ -1.11
HOXD11P31277 RNU2-68P-201ENST00000410878 191 ntBASIC8.12□□□□□ -1.11
HOXD11P31277 RNA5SP115-201ENST00000411160 107 ntBASIC8.12□□□□□ -1.11
HOXD11P31277 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC8.12□□□□□ -1.11
HOXD11P31277 AL031848.1-201ENST00000419034 351 ntTSL 5 BASIC8.12□□□□□ -1.11
HOXD11P31277 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC8.12□□□□□ -1.11
HOXD11P31277 AF228730.3-201ENST00000436691 102 ntBASIC8.12□□□□□ -1.11
HOXD11P31277 AC002368.1-201ENST00000456981 388 ntTSL 3 BASIC8.12□□□□□ -1.11
HOXD11P31277 RNU6-365P-201ENST00000517113 106 ntBASIC8.12□□□□□ -1.11
HOXD11P31277 AC016876.3-201ENST00000610459 426 ntBASIC8.12□□□□□ -1.11
HOXD11P31277 NBPF15-203ENST00000577412 4707 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
HOXD11P31277 CDC42SE2-208ENST00000505065 4352 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC8.12□□□□□ -1.11
HOXD11P31277 AKAP17BP-201ENST00000431706 2719 ntBASIC8.12□□□□□ -1.11
HOXD11P31277 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC8.12□□□□□ -1.11
HOXD11P31277 BTN2A2-202ENST00000356709 3590 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 MAPK10-345ENST00000641724 2980 ntAPPRIS P2 BASIC8.12□□□□□ -1.11
HOXD11P31277 MAPK10-202ENST00000359221 2668 ntTSL 5 BASIC8.12□□□□□ -1.11
HOXD11P31277 MAPK10-204ENST00000395157 2665 ntTSL 5 BASIC8.12□□□□□ -1.11
HOXD11P31277 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC8.12□□□□□ -1.11
HOXD11P31277 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC8.12□□□□□ -1.11
HOXD11P31277 FBXL17-206ENST00000619412 4059 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 ACSL6-206ENST00000379255 2301 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 MSL3P1-201ENST00000438684 2032 ntTSL 2 BASIC8.12□□□□□ -1.11
HOXD11P31277 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC8.12□□□□□ -1.11
HOXD11P31277 CDC27-204ENST00000527547 2579 ntAPPRIS ALT1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC8.12□□□□□ -1.11
HOXD11P31277 ABRAXAS1-201ENST00000321945 4291 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXD11P31277 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 NVL-203ENST00000391875 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 CASK-208ENST00000442742 2800 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 NF1P2-201ENST00000556855 2505 ntBASIC8.11□□□□□ -1.11
HOXD11P31277 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC8.11□□□□□ -1.11
HOXD11P31277 SLC16A4-210ENST00000541986 2496 ntTSL 2 BASIC8.11□□□□□ -1.11
HOXD11P31277 ARID1A-209ENST00000615191 3804 ntTSL 5 BASIC8.11□□□□□ -1.11
HOXD11P31277 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 TBC1D31-202ENST00000327098 2985 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 NLRP3-204ENST00000366497 4318 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 GABRA1-202ENST00000393943 4686 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC8.11□□□□□ -1.11
HOXD11P31277 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
HOXD11P31277 RNY4P6-201ENST00000363667 96 ntBASIC8.11□□□□□ -1.11
HOXD11P31277 AC003071.2-201ENST00000423857 315 ntBASIC8.11□□□□□ -1.11
HOXD11P31277 GH2-202ENST00000423893 819 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 RPS29P2-201ENST00000479278 136 ntBASIC8.11□□□□□ -1.11
HOXD11P31277 AC006539.1-201ENST00000481419 501 ntBASIC8.11□□□□□ -1.11
HOXD11P31277 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC8.11□□□□□ -1.11
HOXD11P31277 AC016559.1-201ENST00000511420 199 ntBASIC8.11□□□□□ -1.11
HOXD11P31277 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC8.11□□□□□ -1.11
HOXD11P31277 CDRT1-203ENST00000395667 3016 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
HOXD11P31277 C2CD3-201ENST00000313663 6283 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 SNCAIP-201ENST00000261367 4986 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC8.11□□□□□ -1.11
HOXD11P31277 SLC9A6-207ENST00000636092 4697 ntTSL 5 BASIC8.11□□□□□ -1.11
HOXD11P31277 CD180-201ENST00000256447 5388 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 AP005435.3-201ENST00000531260 3198 ntBASIC8.11□□□□□ -1.11
HOXD11P31277 IL31RA-207ENST00000490985 2414 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 VSIG4-204ENST00000455586 2190 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 ZSCAN23-201ENST00000289788 3126 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXD11P31277 TANC1-201ENST00000263635 7470 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
HOXD11P31277 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC8.11□□□□□ -1.11
HOXD11P31277 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC8.1□□□□□ -1.11
HOXD11P31277 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
HOXD11P31277 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC8.1□□□□□ -1.11
HOXD11P31277 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
HOXD11P31277 AC124804.1-202ENST00000583712 4315 ntTSL 5 BASIC8.1□□□□□ -1.11
HOXD11P31277 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXD11P31277 LINC01182-202ENST00000510907 2228 ntTSL 2 BASIC8.1□□□□□ -1.11
HOXD11P31277 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXD11P31277 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
HOXD11P31277 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXD11P31277 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
HOXD11P31277 ACLY-207ENST00000590151 4309 ntAPPRIS P4 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXD11P31277 LTBP1-207ENST00000418533 5164 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
HOXD11P31277 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC8.1□□□□□ -1.11
HOXD11P31277 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
HOXD11P31277 RNU2-70P-201ENST00000410718 179 ntBASIC8.1□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 251.6 ms