RNA–Protein interactions for RNA: ENST00000393943.9

GABRA1-202, Transcript of gamma-aminobutyric acid type A receptor alpha1 subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABRA1, Length 4,686 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRA1-202ENST00000393943 NISCHQ9Y2I1 1504 aa15.56■□□□□ 0.08
GABRA1-202ENST00000393943 SUPT5HO00267 1087 aaKnown RBP14.04□□□□□ -0.16
GABRA1-202ENST00000393943 SHROOM4Q9ULL8 1493 aa13.88□□□□□ -0.19
GABRA1-202ENST00000393943 PELP1Q8IZL8 1130 aaKnown RBP13.87□□□□□ -0.19
GABRA1-202ENST00000393943 DCAF8L2P0C7V8 631 aa13.79□□□□□ -0.2
GABRA1-202ENST00000393943 HRCP23327 699 aa13.74□□□□□ -0.21
GABRA1-202ENST00000393943 ZEB1P37275 1124 aaPredicted RBP13.73□□□□□ -0.21
GABRA1-202ENST00000393943 PCGF6Q9BYE7 350 aa13.66□□□□□ -0.22
GABRA1-202ENST00000393943 MYT1Q01538 1121 aa13.61□□□□□ -0.23
GABRA1-202ENST00000393943 TRIM26Q12899 539 aaPredicted RBP13.42□□□□□ -0.26
GABRA1-202ENST00000393943 CHIC1Q5VXU3 224 aa13.41□□□□□ -0.26
GABRA1-202ENST00000393943 CENPBP07199 599 aaPredicted RBP13.36□□□□□ -0.27
GABRA1-202ENST00000393943 DCAF1Q9Y4B6 1507 aa13.22□□□□□ -0.29
GABRA1-202ENST00000393943 TRIM41Q8WV44 630 aa13.19□□□□□ -0.3
GABRA1-202ENST00000393943 ZCCHC6Q5VYS8 1495 aaKnown RBP13.13□□□□□ -0.31
GABRA1-202ENST00000393943 CCER1Q8TC90 406 aaPredicted RBP13.09□□□□□ -0.31
GABRA1-202ENST00000393943 PPARGC1BQ86YN6 1023 aaKnown RBP13.07□□□□□ -0.32
GABRA1-202ENST00000393943 CCDC180Q9P1Z9 1646 aa13.04□□□□□ -0.32
GABRA1-202ENST00000393943 FAM9AQ8IZU1 332 aaPredicted RBP13.01□□□□□ -0.33
GABRA1-202ENST00000393943 LOC105371045A0A1W2PR82 267 aa12.99□□□□□ -0.33
GABRA1-202ENST00000393943 APLP2Q06481 763 aa12.96□□□□□ -0.33
GABRA1-202ENST00000393943 EHMT2Q96KQ7 1210 aa12.89□□□□□ -0.35
GABRA1-202ENST00000393943 MYO15BQ96JP2 1530 aa12.85□□□□□ -0.35
GABRA1-202ENST00000393943 DIEXFQ68CQ4 756 aaKnown RBP12.8□□□□□ -0.36
GABRA1-202ENST00000393943 ACIN1Q9UKV3 1341 aaKnown RBP12.78□□□□□ -0.36
GABRA1-202ENST00000393943 CLSPNQ9HAW4 1339 aa12.7□□□□□ -0.38
GABRA1-202ENST00000393943 UBTFP17480 764 aaKnown RBP12.69□□□□□ -0.38
GABRA1-202ENST00000393943 GTF3C3Q9Y5Q9 886 aa12.67□□□□□ -0.38
GABRA1-202ENST00000393943 YTHDC1Q96MU7 727 aaKnown RBP12.64□□□□□ -0.39
GABRA1-202ENST00000393943 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.64□□□□□ -0.39
GABRA1-202ENST00000393943 SCAF1Q9H7N4 1312 aaKnown RBP12.62□□□□□ -0.39
GABRA1-202ENST00000393943 TTBK1Q5TCY1 1321 aaPredicted RBP12.62□□□□□ -0.39
GABRA1-202ENST00000393943 NEFLP07196 543 aa12.61□□□□□ -0.39
GABRA1-202ENST00000393943 ZNF316A6NFI3 1004 aaPredicted RBP12.6□□□□□ -0.39
GABRA1-202ENST00000393943 ERICH6Q7L0X2 663 aa12.56□□□□□ -0.4
GABRA1-202ENST00000393943 NEUROD1Q13562 356 aa12.47□□□□□ -0.41
GABRA1-202ENST00000393943 RB1CC1Q8TDY2 1594 aa12.44□□□□□ -0.42
GABRA1-202ENST00000393943 RSF1Q96T23 1441 aaPredicted RBP12.44□□□□□ -0.42
GABRA1-202ENST00000393943 ABCC9O60706 1549 aa12.43□□□□□ -0.42
GABRA1-202ENST00000393943 EEA1Q15075 1411 aa12.4□□□□□ -0.42
GABRA1-202ENST00000393943 HNRNPUL2Q1KMD3 747 aaKnown RBP12.4□□□□□ -0.42
GABRA1-202ENST00000393943 SCRIBQ14160 1630 aa12.38□□□□□ -0.43
GABRA1-202ENST00000393943 CSRNP3Q8WYN3 585 aa12.35□□□□□ -0.43
GABRA1-202ENST00000393943 TNIKQ9UKE5 1360 aa12.26□□□□□ -0.45
GABRA1-202ENST00000393943 RANGAP1P46060 587 aaPredicted RBP12.25□□□□□ -0.45
GABRA1-202ENST00000393943 CEP162Q5TB80 1403 aa12.24□□□□□ -0.45
GABRA1-202ENST00000393943 NACADO15069 1562 aa12.22□□□□□ -0.45
GABRA1-202ENST00000393943 GOLGA3Q08378 1498 aa12.22□□□□□ -0.45
GABRA1-202ENST00000393943 MYT1LQ9UL68 1186 aa12.22□□□□□ -0.45
GABRA1-202ENST00000393943 WRNQ14191 1432 aaPredicted RBP eCLIP12.18□□□□□ -0.46
GABRA1-202ENST00000393943 MIER1Q8N108 512 aa12.16□□□□□ -0.46
GABRA1-202ENST00000393943 ANP32CO43423 234 aa12.14□□□□□ -0.47
GABRA1-202ENST00000393943 BAZ1AQ9NRL2 1556 aaPredicted RBP12.13□□□□□ -0.47
GABRA1-202ENST00000393943 CDK11AQ9UQ88 783 aaPredicted RBP12.12□□□□□ -0.47
GABRA1-202ENST00000393943 CLIP1P30622 1438 aa12.11□□□□□ -0.47
GABRA1-202ENST00000393943 CEP164Q9UPV0 1460 aa12.11□□□□□ -0.47
GABRA1-202ENST00000393943 ANP32EQ9BTT0 268 aa12.08□□□□□ -0.48
GABRA1-202ENST00000393943 ITGAEP38570 1179 aa12.07□□□□□ -0.48
GABRA1-202ENST00000393943 ATP1B4Q9UN42 357 aaPredicted RBP12.06□□□□□ -0.48
GABRA1-202ENST00000393943 RTL5Q5HYW3 569 aaPredicted RBP12.04□□□□□ -0.48
GABRA1-202ENST00000393943 BCANQ96GW7 911 aa12□□□□□ -0.49
GABRA1-202ENST00000393943 FKBP8Q14318 412 aa11.99□□□□□ -0.49
GABRA1-202ENST00000393943 MROH2BQ7Z745 1585 aa11.98□□□□□ -0.49
GABRA1-202ENST00000393943 SUPT16HQ9Y5B9 1047 aaKnown RBP11.98□□□□□ -0.49
GABRA1-202ENST00000393943 VPS8Q8N3P4 1428 aa11.97□□□□□ -0.49
GABRA1-202ENST00000393943 CECR2Q9BXF3 1484 aa11.96□□□□□ -0.49
GABRA1-202ENST00000393943 FAM50AQ14320 339 aaKnown RBP11.96□□□□□ -0.5
GABRA1-202ENST00000393943 TOP2AP11388 1531 aaKnown RBP11.94□□□□□ -0.5
GABRA1-202ENST00000393943 TIMELESSQ9UNS1 1208 aa11.93□□□□□ -0.5
GABRA1-202ENST00000393943 DAXXQ9UER7 740 aaPredicted RBP11.92□□□□□ -0.5
GABRA1-202ENST00000393943 BAZ1BQ9UIG0 1483 aaKnown RBP11.9□□□□□ -0.5
GABRA1-202ENST00000393943 TONSLQ96HA7 1378 aa11.89□□□□□ -0.51
GABRA1-202ENST00000393943 SOGA1O94964 1423 aa11.88□□□□□ -0.51
GABRA1-202ENST00000393943 ANP32AP39687 249 aaKnown RBP11.87□□□□□ -0.51
GABRA1-202ENST00000393943 WIZO95785 1651 aa11.87□□□□□ -0.51
GABRA1-202ENST00000393943 CCDC88BA6NC98 1476 aa11.87□□□□□ -0.51
GABRA1-202ENST00000393943 DDX10Q13206 875 aaKnown RBP11.86□□□□□ -0.51
GABRA1-202ENST00000393943 CCER2I3L3R5 266 aa11.85□□□□□ -0.51
GABRA1-202ENST00000393943 ERICH6BQ5W0A0 696 aa11.83□□□□□ -0.52
GABRA1-202ENST00000393943 ABCC8Q09428 1581 aa11.83□□□□□ -0.52
GABRA1-202ENST00000393943 CCNB3Q8WWL7 1395 aa11.81□□□□□ -0.52
GABRA1-202ENST00000393943 HNRNPUQ00839 825 aaKnown RBP eCLIP11.8□□□□□ -0.52
GABRA1-202ENST00000393943 TSHZ2Q9NRE2 1034 aa11.79□□□□□ -0.52
GABRA1-202ENST00000393943 KIF27Q86VH2 1401 aa11.79□□□□□ -0.52
GABRA1-202ENST00000393943 BCL11AQ9H165 835 aa11.77□□□□□ -0.52
GABRA1-202ENST00000393943 PABPN1Q86U42 306 aaKnown RBP eCLIP11.76□□□□□ -0.53
GABRA1-202ENST00000393943 TRIM52Q96A61 297 aa11.75□□□□□ -0.53
GABRA1-202ENST00000393943 KIF21BO75037 1637 aa11.74□□□□□ -0.53
GABRA1-202ENST00000393943 SMARCA4P51532 1647 aa11.74□□□□□ -0.53
GABRA1-202ENST00000393943 DHX57Q6P158 1386 aaKnown RBP11.73□□□□□ -0.53
GABRA1-202ENST00000393943 FHAD1B1AJZ9 1412 aa11.73□□□□□ -0.53
GABRA1-202ENST00000393943 PPP4R2Q9NY27 417 aa11.72□□□□□ -0.53
GABRA1-202ENST00000393943 RBM19Q9Y4C8 960 aaKnown RBP11.71□□□□□ -0.53
GABRA1-202ENST00000393943 SETD5Q9C0A6 1442 aa11.71□□□□□ -0.53
GABRA1-202ENST00000393943 SMARCA2P51531 1590 aa11.7□□□□□ -0.54
GABRA1-202ENST00000393943 ZBTB47Q9UFB7 747 aaPredicted RBP11.68□□□□□ -0.54
GABRA1-202ENST00000393943 POLR3GLQ9BT43 218 aa11.68□□□□□ -0.54
GABRA1-202ENST00000393943 EIF4G2P78344 907 aaKnown RBP eCLIP11.67□□□□□ -0.54
GABRA1-202ENST00000393943 CCDC136Q96JN2 1154 aa11.65□□□□□ -0.54
GABRA1-202ENST00000393943 MTUS2Q5JR59 1369 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms