Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MTND4P19-201ENST00000446659 478 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 RPS15AP27-201ENST00000449183 343 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 SETP20-201ENST00000457046 852 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 RPL35AP28-201ENST00000459730 331 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 MTCO1P29-201ENST00000496868 288 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 RN7SKP288-201ENST00000516227 268 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 RNU6-685P-201ENST00000517088 95 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 IGHVIII-47-1-201ENST00000518187 331 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC084121.1-201ENST00000533882 835 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 OR11H5P-201ENST00000554039 926 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 BNIP3P5-201ENST00000562290 498 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 FKBP1AP1-201ENST00000594588 318 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 DPPA3P3-201ENST00000603842 430 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AL138889.2-201ENST00000603883 242 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC104662.1-201ENST00000604448 511 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC092266.1-201ENST00000610958 165 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AP000432.2-201ENST00000624164 2048 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 NLN-202ENST00000502464 8354 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 RNU6-288P-201ENST00000363690 104 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 RNU1-65P-201ENST00000363919 148 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 RNU6-82P-201ENST00000363970 107 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 RNU6-1127P-201ENST00000384580 107 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 CISD1P1-201ENST00000393907 327 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 RNA5SP431-201ENST00000410312 120 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC074085.1-201ENST00000413598 418 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AL451139.1-201ENST00000434718 346 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 NDUFA5P4-201ENST00000436704 385 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 MTCYBP6-201ENST00000441810 138 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 DNAJC19P5-201ENST00000443295 316 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC107399.1-201ENST00000451226 265 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC009963.3-201ENST00000458090 486 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 Y_RNA.635-201ENST00000459041 101 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC098847.1-201ENST00000473094 348 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 RPL7P43-201ENST00000478876 753 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 CR383656.1-201ENST00000484916 377 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 TRBV5-2-201ENST00000489095 273 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AP001086.1-201ENST00000494882 321 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 GMPSP1-201ENST00000514075 579 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 RNU6-1170P-201ENST00000515974 106 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 RNU6-189P-201ENST00000516120 101 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 RN7SKP238-201ENST00000516483 249 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 SNORA25.17-201ENST00000517184 124 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 IGKV1OR22-1-201ENST00000521497 360 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AP003080.1-202ENST00000526526 915 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AP000889.2-201ENST00000532684 490 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 HNRNPCP4-201ENST00000571636 900 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms