Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 OR4H12P-201ENST00000556269 907 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AL049779.3-201ENST00000557141 606 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC020910.2-201ENST00000603635 610 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC124916.2-201ENST00000604416 224 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 HMGN2P28-201ENST00000606102 262 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC084781.2-201ENST00000615568 161 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 MIR6806-201ENST00000622141 64 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 ATP5A1P4-201ENST00000556888 1605 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC090229.1-201ENST00000590983 1609 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.132-201ENST00000363421 102 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.167-201ENST00000363735 109 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 RNU6-692P-201ENST00000384496 107 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 RPA3-204ENST00000406109 434 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 MIR548F5-201ENST00000408421 86 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 SNORA11.3-201ENST00000408471 128 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 POLHP1-201ENST00000411806 470 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC245096.1-201ENST00000413104 546 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 CALM2P2-201ENST00000428512 440 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 PRPF38AP2-201ENST00000438179 851 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 NEFMP1-201ENST00000443423 1006 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 SDC4P-201ENST00000453285 601 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 RNU7-66P-201ENST00000459469 62 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC114781.3-201ENST00000512083 142 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 TBCAP3-201ENST00000512475 312 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 HSD3BP3-201ENST00000514706 994 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 RN7SKP35-201ENST00000517210 151 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 RNU6-840P-201ENST00000517275 65 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AL121576.1-201ENST00000556055 276 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 MTCO3P13-201ENST00000577757 781 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 POLR3GP2-201ENST00000588366 668 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AP001330.4-201ENST00000604350 154 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 APOOP1-201ENST00000604695 592 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC245389.1-201ENST00000605141 529 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC012409.4-201ENST00000612923 249 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 Six3os1_2.1-201ENST00000616963 217 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 SNORA11.6-201ENST00000619030 128 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC007998.5-201ENST00000622938 237 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC073592.6-201ENST00000624271 415 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 AC073488.3-201ENST00000631611 778 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 THAP12P5-201ENST00000405864 2275 ntBASIC4.66□□□□□ -1.66
CCDC140Q96MF4 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC140Q96MF4 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC4.65□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms