Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 Y_RNA.560-201ENST00000384689 102 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 EIF4A1P3-201ENST00000411521 244 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 PIGPP2-201ENST00000411569 458 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 TMSB10P2-201ENST00000416049 131 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 RPS27AP7-201ENST00000422792 455 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC012671.1-201ENST00000451912 203 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 USP9YP10-201ENST00000454868 628 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC011276.1-201ENST00000469688 323 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 RNF138P1-201ENST00000502765 546 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 MTCYBP37-201ENST00000510642 1133 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 USP9YP5-201ENST00000511770 630 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 OR5BM1P-201ENST00000512021 366 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 RNA5SP497-201ENST00000516081 97 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 MTCO1P49-201ENST00000523429 802 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC012435.1-202ENST00000568772 240 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC083899.3-201ENST00000603413 594 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AL159169.3-201ENST00000608871 561 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC078899.5-201ENST00000612475 178 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC004777.1-201ENST00000624317 287 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC055839.1-201ENST00000634467 498 ntBASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4CQ96CF2 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 NXPH1-205ENST00000602349 1953 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 CPHL1P-201ENST00000461341 3407 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC105074.1-201ENST00000623380 3095 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 LINC00561-201ENST00000565815 2738 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 RNA5SP307-201ENST00000362863 116 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 SNORA62-201ENST00000365493 153 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 CYCSP45-201ENST00000402289 315 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 BTBD10P2-201ENST00000404779 676 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 RNU4-25P-201ENST00000410569 230 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC004987.3-201ENST00000413879 771 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AL592293.2-201ENST00000422292 996 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC093698.1-201ENST00000423843 571 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 OR4F13P-201ENST00000428478 931 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC097262.1-201ENST00000452559 548 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 TRGVB-201ENST00000453257 471 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 RPS27AP17-201ENST00000463344 455 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC092045.1-201ENST00000495716 1231 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 DEFB131D-201ENST00000526803 184 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 PTP4A1P6-201ENST00000531034 478 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 MIR4697-201ENST00000582977 78 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC110760.3-201ENST00000598794 467 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC105129.3-201ENST00000605455 485 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC113194.1-201ENST00000606037 500 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AC080013.6-201ENST00000606185 215 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AP002360.3-201ENST00000607673 710 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 AL031667.3-201ENST00000620124 655 ntBASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
CHMP4CQ96CF2 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CHMP4CQ96CF2 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
CHMP4CQ96CF2 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CHMP4CQ96CF2 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CHMP4CQ96CF2 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms