RNA–Protein interactions for RNA: ENST00000565815.1

LINC00561-201, long intergenic non-protein coding RNA 561, humanhuman

BASIC

Gene LINC00561, Length 2,738 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00561-201ENST00000565815 AEBP2Q6ZN18 517 aaPredicted RBP18.51■□□□□ 0.55
LINC00561-201ENST00000565815 CHIC1Q5VXU3 224 aa18.13■□□□□ 0.49
LINC00561-201ENST00000565815 PHF23Q9BUL5 403 aaPredicted RBP16.2■□□□□ 0.18
LINC00561-201ENST00000565815 SENP3Q9H4L4 574 aaPredicted RBP15.31■□□□□ 0.04
LINC00561-201ENST00000565815 PLPPR3Q6T4P5 718 aa14.78□□□□□ -0.04
LINC00561-201ENST00000565815 FOXD1Q16676 465 aa14.41□□□□□ -0.1
LINC00561-201ENST00000565815 PPP6R1Q9UPN7 881 aa14.26□□□□□ -0.13
LINC00561-201ENST00000565815 ADRA2BP18089 450 aa14.23□□□□□ -0.13
LINC00561-201ENST00000565815 PIAS4Q8N2W9 510 aaPredicted RBP13.63□□□□□ -0.23
LINC00561-201ENST00000565815 KCNA4P22459 653 aa13.41□□□□□ -0.26
LINC00561-201ENST00000565815 PPP4R3CPQ6ZMV5 832 aa13.17□□□□□ -0.3
LINC00561-201ENST00000565815 EHMT2Q96KQ7 1210 aa12.91□□□□□ -0.34
LINC00561-201ENST00000565815 MAPK8IP2Q13387 824 aaPredicted RBP12.87□□□□□ -0.35
LINC00561-201ENST00000565815 MSH5O43196 834 aa12.87□□□□□ -0.35
LINC00561-201ENST00000565815 NPM3O75607 178 aaKnown RBP12.81□□□□□ -0.36
LINC00561-201ENST00000565815 NCBP3Q53F19 620 aaKnown RBP12.68□□□□□ -0.38
LINC00561-201ENST00000565815 SLC4A1APQ9BWU0 796 aaKnown RBP12.66□□□□□ -0.38
LINC00561-201ENST00000565815 CNKSR2Q8WXI2 1034 aa12.61□□□□□ -0.39
LINC00561-201ENST00000565815 SCAF1Q9H7N4 1312 aaKnown RBP12.56□□□□□ -0.4
LINC00561-201ENST00000565815 CSRNP3Q8WYN3 585 aa12.52□□□□□ -0.41
LINC00561-201ENST00000565815 ZBTB22O15209 634 aa12.45□□□□□ -0.42
LINC00561-201ENST00000565815 DMRT2Q9Y5R5 561 aa12.33□□□□□ -0.44
LINC00561-201ENST00000565815 RNF216Q9NWF9 866 aaPredicted RBP12.28□□□□□ -0.44
LINC00561-201ENST00000565815 HOXD11P31277 338 aaPredicted RBP12.18□□□□□ -0.46
LINC00561-201ENST00000565815 SLC4A2P04920 1241 aa12.07□□□□□ -0.48
LINC00561-201ENST00000565815 FOXD4L1Q9NU39 408 aa12.03□□□□□ -0.48
LINC00561-201ENST00000565815 DNAJC5BQ9UF47 199 aa12.02□□□□□ -0.49
LINC00561-201ENST00000565815 DCAF8L1A6NGE4 600 aa11.95□□□□□ -0.5
LINC00561-201ENST00000565815 ATF5Q9Y2D1 282 aaPredicted RBP11.66□□□□□ -0.54
LINC00561-201ENST00000565815 MYCNP04198 464 aaPredicted RBP11.65□□□□□ -0.55
LINC00561-201ENST00000565815 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.65□□□□□ -0.55
LINC00561-201ENST00000565815 U3KPZ7 1027 aaPredicted RBP11.61□□□□□ -0.55
LINC00561-201ENST00000565815 POTEDQ86YR6 584 aa11.42□□□□□ -0.58
LINC00561-201ENST00000565815 ATXN8OSP0DMR3 200 aa11.38□□□□□ -0.59
LINC00561-201ENST00000565815 SPINK5Q9NQ38 1064 aaPredicted RBP11.31□□□□□ -0.6
LINC00561-201ENST00000565815 SAMD1Q6SPF0 538 aaPredicted RBP11.28□□□□□ -0.6
LINC00561-201ENST00000565815 FKBP8Q14318 412 aa11.27□□□□□ -0.61
LINC00561-201ENST00000565815 RNF39Q9H2S5 420 aa11.22□□□□□ -0.61
LINC00561-201ENST00000565815 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.21□□□□□ -0.61
LINC00561-201ENST00000565815 HNRNPUL2Q1KMD3 747 aaKnown RBP11.21□□□□□ -0.61
LINC00561-201ENST00000565815 ZNF219Q9P2Y4 722 aaPredicted RBP11.18□□□□□ -0.62
LINC00561-201ENST00000565815 TRHP20396 242 aaPredicted RBP11.17□□□□□ -0.62
LINC00561-201ENST00000565815 CAPN15O75808 1086 aa11.09□□□□□ -0.63
LINC00561-201ENST00000565815 MKRN4PQ13434 485 aaPredicted RBP11.08□□□□□ -0.64
LINC00561-201ENST00000565815 ABCB7O75027 752 aa11.05□□□□□ -0.64
LINC00561-201ENST00000565815 POLA2Q14181 598 aa11.04□□□□□ -0.64
LINC00561-201ENST00000565815 C1QBPQ07021 282 aaKnown RBP10.95□□□□□ -0.66
LINC00561-201ENST00000565815 RTN4Q9NQC3 1192 aaKnown RBP10.93□□□□□ -0.66
LINC00561-201ENST00000565815 APLP2Q06481 763 aa10.89□□□□□ -0.67
LINC00561-201ENST00000565815 SPDYE4A6NLX3 237 aa10.84□□□□□ -0.67
LINC00561-201ENST00000565815 DSG3P32926 999 aa10.84□□□□□ -0.67
LINC00561-201ENST00000565815 FBLN2P98095 1184 aa10.74□□□□□ -0.69
LINC00561-201ENST00000565815 OSCARQ8IYS5 282 aa10.72□□□□□ -0.69
LINC00561-201ENST00000565815 CACNB1Q02641 598 aaPredicted RBP10.69□□□□□ -0.7
LINC00561-201ENST00000565815 PROM2Q8N271 834 aa10.65□□□□□ -0.7
LINC00561-201ENST00000565815 AMER1Q5JTC6 1135 aaPredicted RBP10.61□□□□□ -0.71
LINC00561-201ENST00000565815 ZNF692Q9BU19 519 aaPredicted RBP10.54□□□□□ -0.72
LINC00561-201ENST00000565815 VASPP50552 380 aaPredicted RBP10.53□□□□□ -0.72
LINC00561-201ENST00000565815 IFNLR1Q8IU57 520 aaPredicted RBP10.53□□□□□ -0.72
LINC00561-201ENST00000565815 ZBTB12Q9Y330 459 aaPredicted RBP10.53□□□□□ -0.72
LINC00561-201ENST00000565815 PABPN1Q86U42 306 aaKnown RBP eCLIP10.48□□□□□ -0.73
LINC00561-201ENST00000565815 FBXO3Q9UK99 471 aa10.46□□□□□ -0.74
LINC00561-201ENST00000565815 SSUH2Q9Y2M2 353 aa10.46□□□□□ -0.74
LINC00561-201ENST00000565815 SPDYE2BA6NHP3 402 aa10.41□□□□□ -0.74
LINC00561-201ENST00000565815 SPDYE6P0CI01 402 aa10.41□□□□□ -0.74
LINC00561-201ENST00000565815 SPDYE2Q495Y8 402 aa10.41□□□□□ -0.74
LINC00561-201ENST00000565815 PKD2Q13563 968 aa10.29□□□□□ -0.76
LINC00561-201ENST00000565815 KLHL34Q8N239 644 aa10.25□□□□□ -0.77
LINC00561-201ENST00000565815 PLCD3Q8N3E9 789 aa10.24□□□□□ -0.77
LINC00561-201ENST00000565815 SLC24A1O60721 1099 aa10.23□□□□□ -0.77
LINC00561-201ENST00000565815 MIER1Q8N108 512 aa10.23□□□□□ -0.77
LINC00561-201ENST00000565815 DCAF8L2P0C7V8 631 aa10.19□□□□□ -0.78
LINC00561-201ENST00000565815 CLEC11AQ9Y240 323 aa10.18□□□□□ -0.78
LINC00561-201ENST00000565815 STAG3Q9UJ98 1225 aa10.13□□□□□ -0.79
LINC00561-201ENST00000565815 SPOCK2Q92563 424 aa10.13□□□□□ -0.79
LINC00561-201ENST00000565815 REM2Q8IYK8 340 aaPredicted RBP10.13□□□□□ -0.79
LINC00561-201ENST00000565815 RGL2O15211 777 aa10.1□□□□□ -0.79
LINC00561-201ENST00000565815 PITPNM1O00562 1244 aa10.07□□□□□ -0.8
LINC00561-201ENST00000565815 AKT1S1Q96B36 256 aa10.07□□□□□ -0.8
LINC00561-201ENST00000565815 ECM2O94769 699 aaPredicted RBP10.06□□□□□ -0.8
LINC00561-201ENST00000565815 CIZ1Q9ULV3 898 aaPredicted RBP10.06□□□□□ -0.8
LINC00561-201ENST00000565815 NPM1P06748 294 aaKnown RBP eCLIP10.05□□□□□ -0.8
LINC00561-201ENST00000565815 RBM42Q9BTD8 480 aaKnown RBP10.05□□□□□ -0.8
LINC00561-201ENST00000565815 CREBZFQ9NS37 354 aa10.04□□□□□ -0.8
LINC00561-201ENST00000565815 MNX1P50219 401 aaPredicted RBP10.03□□□□□ -0.8
LINC00561-201ENST00000565815 SPDYE1Q8NFV5 336 aaPredicted RBP10.02□□□□□ -0.81
LINC00561-201ENST00000565815 CHADLQ6NUI6 762 aa10.01□□□□□ -0.81
LINC00561-201ENST00000565815 PRR29P0C7W0 189 aa10.01□□□□□ -0.81
LINC00561-201ENST00000565815 RNF25Q96BH1 459 aaPredicted RBP9.99□□□□□ -0.81
LINC00561-201ENST00000565815 NUBP1P53384 320 aa9.97□□□□□ -0.81
LINC00561-201ENST00000565815 RASEFQ8IZ41 740 aa9.95□□□□□ -0.82
LINC00561-201ENST00000565815 PLCB2Q00722 1185 aa9.95□□□□□ -0.82
LINC00561-201ENST00000565815 PLEKHG5O94827 1062 aa9.91□□□□□ -0.82
LINC00561-201ENST00000565815 DCAF8Q5TAQ9 597 aa9.86□□□□□ -0.83
LINC00561-201ENST00000565815 ZBTB47Q9UFB7 747 aaPredicted RBP9.86□□□□□ -0.83
LINC00561-201ENST00000565815 CHGAP10645 457 aaKnown RBP9.86□□□□□ -0.83
LINC00561-201ENST00000565815 HAP1P54257 671 aaPredicted RBP9.86□□□□□ -0.83
LINC00561-201ENST00000565815 PYGBP11216 843 aa9.84□□□□□ -0.83
LINC00561-201ENST00000565815 CFAP44Q96MT7 982 aa9.82□□□□□ -0.84
LINC00561-201ENST00000565815 PAXIP1Q6ZW49 1069 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms