RNA–Protein interactions for RNA: ENST00000395198.7

HERC4-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERC4, Length 4,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-204ENST00000395198 SLC24A1O60721 1099 aa8.94□□□□□ -0.98
HERC4-204ENST00000395198 DAXXQ9UER7 740 aaPredicted RBP8.15□□□□□ -1.1
HERC4-204ENST00000395198 PLPPR3Q6T4P5 718 aa8.12□□□□□ -1.11
HERC4-204ENST00000395198 EHMT2Q96KQ7 1210 aa8.1□□□□□ -1.11
HERC4-204ENST00000395198 PRKCSHP14314 528 aaPredicted RBP8.02□□□□□ -1.13
HERC4-204ENST00000395198 RTN4Q9NQC3 1192 aaKnown RBP8□□□□□ -1.13
HERC4-204ENST00000395198 APLP2Q06481 763 aa7.97□□□□□ -1.13
HERC4-204ENST00000395198 NCBP3Q53F19 620 aaKnown RBP7.94□□□□□ -1.14
HERC4-204ENST00000395198 CHIC1Q5VXU3 224 aa7.94□□□□□ -1.14
HERC4-204ENST00000395198 TTBK1Q5TCY1 1321 aaPredicted RBP7.83□□□□□ -1.16
HERC4-204ENST00000395198 MYT1Q01538 1121 aa7.8□□□□□ -1.16
HERC4-204ENST00000395198 PELP1Q8IZL8 1130 aaKnown RBP7.72□□□□□ -1.17
HERC4-204ENST00000395198 KCNA4P22459 653 aa7.67□□□□□ -1.18
HERC4-204ENST00000395198 ERICH6Q7L0X2 663 aa7.67□□□□□ -1.18
HERC4-204ENST00000395198 TIMELESSQ9UNS1 1208 aa7.66□□□□□ -1.18
HERC4-204ENST00000395198 AMER1Q5JTC6 1135 aaPredicted RBP7.64□□□□□ -1.19
HERC4-204ENST00000395198 ARXQ96QS3 562 aa7.61□□□□□ -1.19
HERC4-204ENST00000395198 CSRNP3Q8WYN3 585 aa7.57□□□□□ -1.2
HERC4-204ENST00000395198 KLHL34Q8N239 644 aa7.48□□□□□ -1.21
HERC4-204ENST00000395198 TULP1O00294 542 aaPredicted RBP7.46□□□□□ -1.22
HERC4-204ENST00000395198 AEBP2Q6ZN18 517 aaPredicted RBP7.42□□□□□ -1.22
HERC4-204ENST00000395198 TAOK2Q9UL54 1235 aa7.41□□□□□ -1.22
HERC4-204ENST00000395198 EIF5BO60841 1220 aaKnown RBP7.38□□□□□ -1.23
HERC4-204ENST00000395198 PHF23Q9BUL5 403 aaPredicted RBP7.34□□□□□ -1.23
HERC4-204ENST00000395198 PLEKHG5O94827 1062 aa7.32□□□□□ -1.24
HERC4-204ENST00000395198 HOMEZQ8IX15 550 aa7.32□□□□□ -1.24
HERC4-204ENST00000395198 RANGAP1P46060 587 aaPredicted RBP7.29□□□□□ -1.24
HERC4-204ENST00000395198 TPRNQ4KMQ1 711 aa7.26□□□□□ -1.25
HERC4-204ENST00000395198 PODXL2Q9NZ53 605 aa7.26□□□□□ -1.25
HERC4-204ENST00000395198 BCANQ96GW7 911 aa7.19□□□□□ -1.26
HERC4-204ENST00000395198 GTF3C3Q9Y5Q9 886 aa7.17□□□□□ -1.26
HERC4-204ENST00000395198 PLCB2Q00722 1185 aa7.11□□□□□ -1.27
HERC4-204ENST00000395198 NPM2Q86SE8 214 aaKnown RBP7.1□□□□□ -1.27
HERC4-204ENST00000395198 BCL11AQ9H165 835 aa7.09□□□□□ -1.28
HERC4-204ENST00000395198 LOC105371045A0A1W2PR82 267 aa7.06□□□□□ -1.28
HERC4-204ENST00000395198 TMEM132AQ24JP5 1023 aa7.03□□□□□ -1.28
HERC4-204ENST00000395198 TRIM26Q12899 539 aaPredicted RBP7.02□□□□□ -1.29
HERC4-204ENST00000395198 C14orf37Q86TY3 774 aa7□□□□□ -1.29
HERC4-204ENST00000395198 FAM9AQ8IZU1 332 aaPredicted RBP6.99□□□□□ -1.29
HERC4-204ENST00000395198 HAP1P54257 671 aaPredicted RBP6.98□□□□□ -1.29
HERC4-204ENST00000395198 HRCP23327 699 aa6.98□□□□□ -1.29
HERC4-204ENST00000395198 SLC4A1APQ9BWU0 796 aaKnown RBP6.98□□□□□ -1.29
HERC4-204ENST00000395198 ZBTB22O15209 634 aa6.94□□□□□ -1.3
HERC4-204ENST00000395198 FBXO3Q9UK99 471 aa6.91□□□□□ -1.3
HERC4-204ENST00000395198 UBTFP17480 764 aaKnown RBP6.91□□□□□ -1.3
HERC4-204ENST00000395198 KDM2AQ9Y2K7 1162 aa6.91□□□□□ -1.3
HERC4-204ENST00000395198 PPP6R1Q9UPN7 881 aa6.89□□□□□ -1.31
HERC4-204ENST00000395198 PDIA4P13667 645 aaKnown RBP6.87□□□□□ -1.31
HERC4-204ENST00000395198 SUPT5HO00267 1087 aaKnown RBP6.86□□□□□ -1.31
HERC4-204ENST00000395198 CHMP4AQ9BY43 222 aa6.84□□□□□ -1.31
HERC4-204ENST00000395198 SAMD1Q6SPF0 538 aaPredicted RBP6.83□□□□□ -1.32
HERC4-204ENST00000395198 FBLN2P98095 1184 aa6.83□□□□□ -1.32
HERC4-204ENST00000395198 UBE2Q2Q8WVN8 375 aa6.81□□□□□ -1.32
HERC4-204ENST00000395198 VSIG10Q8N0Z9 540 aa6.8□□□□□ -1.32
HERC4-204ENST00000395198 DHX37Q8IY37 1157 aaKnown RBP6.77□□□□□ -1.33
HERC4-204ENST00000395198 IGSF3O75054 1194 aa6.76□□□□□ -1.33
HERC4-204ENST00000395198 CNKSR2Q8WXI2 1034 aa6.73□□□□□ -1.33
HERC4-204ENST00000395198 PDE4CQ08493 712 aa6.71□□□□□ -1.34
HERC4-204ENST00000395198 ADRA2BP18089 450 aa6.68□□□□□ -1.34
HERC4-204ENST00000395198 FKBP8Q14318 412 aa6.66□□□□□ -1.34
HERC4-204ENST00000395198 BRD2P25440 801 aaKnown RBP6.64□□□□□ -1.35
HERC4-204ENST00000395198 DCAF8L2P0C7V8 631 aa6.62□□□□□ -1.35
HERC4-204ENST00000395198 BCL11BQ9C0K0 894 aaPredicted RBP6.61□□□□□ -1.35
HERC4-204ENST00000395198 TAF7LQ5H9L4 462 aa6.61□□□□□ -1.35
HERC4-204ENST00000395198 CDK11BP21127 795 aaKnown RBP6.6□□□□□ -1.35
HERC4-204ENST00000395198 CDK11AQ9UQ88 783 aaPredicted RBP6.6□□□□□ -1.35
HERC4-204ENST00000395198 PKNOX2Q96KN3 472 aa6.6□□□□□ -1.35
HERC4-204ENST00000395198 SHROOM4Q9ULL8 1493 aa6.59□□□□□ -1.35
HERC4-204ENST00000395198 CFAP44Q96MT7 982 aa6.58□□□□□ -1.36
HERC4-204ENST00000395198 TRHP20396 242 aaPredicted RBP6.58□□□□□ -1.36
HERC4-204ENST00000395198 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.58□□□□□ -1.36
HERC4-204ENST00000395198 NPM3O75607 178 aaKnown RBP6.57□□□□□ -1.36
HERC4-204ENST00000395198 FGD1P98174 961 aa6.53□□□□□ -1.36
HERC4-204ENST00000395198 NECTIN2Q92692 538 aa6.53□□□□□ -1.36
HERC4-204ENST00000395198 NEFLP07196 543 aa6.53□□□□□ -1.36
HERC4-204ENST00000395198 HSP90B1P14625 803 aaKnown RBP6.5□□□□□ -1.37
HERC4-204ENST00000395198 PUS7Q96PZ0 661 aaKnown RBP6.47□□□□□ -1.37
HERC4-204ENST00000395198 ANO8Q9HCE9 1232 aaPredicted RBP6.47□□□□□ -1.37
HERC4-204ENST00000395198 IRX6P78412 446 aaPredicted RBP6.46□□□□□ -1.38
HERC4-204ENST00000395198 CCDC9Q9Y3X0 531 aaKnown RBP6.45□□□□□ -1.38
HERC4-204ENST00000395198 C1orf115Q9H7X2 142 aa6.45□□□□□ -1.38
HERC4-204ENST00000395198 CCDC136Q96JN2 1154 aa6.45□□□□□ -1.38
HERC4-204ENST00000395198 TSHZ2Q9NRE2 1034 aa6.44□□□□□ -1.38
HERC4-204ENST00000395198 RSPH4AQ5TD94 716 aa6.43□□□□□ -1.38
HERC4-204ENST00000395198 ZNF428Q96B54 188 aa6.43□□□□□ -1.38
HERC4-204ENST00000395198 BRPF3Q9ULD4 1205 aa6.41□□□□□ -1.38
HERC4-204ENST00000395198 NPM1P06748 294 aaKnown RBP eCLIP6.4□□□□□ -1.38
HERC4-204ENST00000395198 NISCHQ9Y2I1 1504 aa6.4□□□□□ -1.38
HERC4-204ENST00000395198 ARID3AQ99856 593 aa6.4□□□□□ -1.39
HERC4-204ENST00000395198 PAXIP1Q6ZW49 1069 aaPredicted RBP6.39□□□□□ -1.39
HERC4-204ENST00000395198 ZNF692Q9BU19 519 aaPredicted RBP6.38□□□□□ -1.39
HERC4-204ENST00000395198 HMGB1P09429 215 aaKnown RBP6.37□□□□□ -1.39
HERC4-204ENST00000395198 TMED8Q6PL24 325 aaPredicted RBP6.36□□□□□ -1.39
HERC4-204ENST00000395198 BCCIPQ9P287 314 aaKnown RBP eCLIP6.36□□□□□ -1.39
HERC4-204ENST00000395198 NBR1Q14596 966 aa6.35□□□□□ -1.39
HERC4-204ENST00000395198 BRPF1P55201 1214 aaPredicted RBP6.35□□□□□ -1.39
HERC4-204ENST00000395198 POLR3GLQ9BT43 218 aa6.35□□□□□ -1.39
HERC4-204ENST00000395198 AAMPQ13685 434 aa6.34□□□□□ -1.39
HERC4-204ENST00000395198 ZFP91Q96JP5 570 aaPredicted RBP6.34□□□□□ -1.39
HERC4-204ENST00000395198 RSPH6AQ9H0K4 717 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms