Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
UBE2D4Q9Y2X8 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 AR-207ENST00000612010 3896 ntTSL 5 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 IRX1P1-201ENST00000438849 1838 ntBASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
UBE2D4Q9Y2X8 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 KRT17P1-201ENST00000399211 1546 ntBASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 OR10C1-204ENST00000622521 1039 ntBASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 AC090340.1-201ENST00000620778 4980 ntBASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
UBE2D4Q9Y2X8 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
UBE2D4Q9Y2X8 AL512353.2-201ENST00000448759 1962 ntBASIC13.4□□□□□ -0.27
UBE2D4Q9Y2X8 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC13.4□□□□□ -0.27
UBE2D4Q9Y2X8 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
UBE2D4Q9Y2X8 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC13.39□□□□□ -0.27
UBE2D4Q9Y2X8 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
UBE2D4Q9Y2X8 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC13.39□□□□□ -0.27
UBE2D4Q9Y2X8 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC13.39□□□□□ -0.27
UBE2D4Q9Y2X8 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
UBE2D4Q9Y2X8 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
UBE2D4Q9Y2X8 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC13.39□□□□□ -0.27
UBE2D4Q9Y2X8 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC13.39□□□□□ -0.27
UBE2D4Q9Y2X8 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms