Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 AC128676.1-201ENST00000454392 318 ntBASIC19.89■□□□□ 0.77
PCDH9Q9HC56 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 AC006333.2-201ENST00000607957 2099 ntBASIC19.88■□□□□ 0.77
PCDH9Q9HC56 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 AC104417.2-201ENST00000562989 1793 ntBASIC19.88■□□□□ 0.77
PCDH9Q9HC56 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 YBX1P10-201ENST00000444752 975 ntBASIC19.88■□□□□ 0.77
PCDH9Q9HC56 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 PRKY-204ENST00000533551 1019 ntBASIC19.88■□□□□ 0.77
PCDH9Q9HC56 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.88■□□□□ 0.77
PCDH9Q9HC56 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.88■□□□□ 0.77
PCDH9Q9HC56 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 MTDHP1-201ENST00000605323 784 ntBASIC19.87■□□□□ 0.77
PCDH9Q9HC56 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDH9Q9HC56 AP006587.1-201ENST00000534129 1502 ntBASIC19.86■□□□□ 0.77
PCDH9Q9HC56 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 KRT8P8-201ENST00000434750 1448 ntBASIC19.86■□□□□ 0.77
PCDH9Q9HC56 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms