Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC25.15■■□□□ 1.62
RTF1Q92541 AC073508.3-201ENST00000619697 1419 ntBASIC25.15■■□□□ 1.62
RTF1Q92541 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC25.15■■□□□ 1.62
RTF1Q92541 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
RTF1Q92541 ATP5G1P1-201ENST00000448724 379 ntBASIC25.15■■□□□ 1.62
RTF1Q92541 AC010203.1-204ENST00000548782 407 ntBASIC25.15■■□□□ 1.62
RTF1Q92541 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC25.15■■□□□ 1.62
RTF1Q92541 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC25.15■■□□□ 1.62
RTF1Q92541 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
RTF1Q92541 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
RTF1Q92541 KRT8P11-201ENST00000409686 1436 ntBASIC25.14■■□□□ 1.62
RTF1Q92541 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
RTF1Q92541 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC25.14■■□□□ 1.62
RTF1Q92541 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
RTF1Q92541 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC25.14■■□□□ 1.62
RTF1Q92541 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC25.14■■□□□ 1.62
RTF1Q92541 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
RTF1Q92541 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
RTF1Q92541 PRSS44-201ENST00000515154 1146 ntBASIC25.14■■□□□ 1.62
RTF1Q92541 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC25.14■■□□□ 1.62
RTF1Q92541 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC25.14■■□□□ 1.61
RTF1Q92541 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC25.14■■□□□ 1.61
RTF1Q92541 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
RTF1Q92541 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
RTF1Q92541 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
RTF1Q92541 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC25.13■■□□□ 1.61
RTF1Q92541 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC25.13■■□□□ 1.61
RTF1Q92541 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC25.13■■□□□ 1.61
RTF1Q92541 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
RTF1Q92541 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
RTF1Q92541 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC25.13■■□□□ 1.61
RTF1Q92541 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC25.13■■□□□ 1.61
RTF1Q92541 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
RTF1Q92541 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC25.13■■□□□ 1.61
RTF1Q92541 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC25.13■■□□□ 1.61
RTF1Q92541 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC25.13■■□□□ 1.61
RTF1Q92541 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
RTF1Q92541 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RTF1Q92541 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RTF1Q92541 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC25.13■■□□□ 1.61
RTF1Q92541 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
RTF1Q92541 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC25.13■■□□□ 1.61
RTF1Q92541 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC25.13■■□□□ 1.61
RTF1Q92541 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC25.12■■□□□ 1.61
RTF1Q92541 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 HMGA1P5-201ENST00000412453 271 ntBASIC25.12■■□□□ 1.61
RTF1Q92541 AC007663.1-201ENST00000438948 1240 ntBASIC25.12■■□□□ 1.61
RTF1Q92541 TSPY17P-201ENST00000450329 467 ntBASIC25.12■■□□□ 1.61
RTF1Q92541 CA15P1-201ENST00000481698 905 ntBASIC25.12■■□□□ 1.61
RTF1Q92541 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC25.12■■□□□ 1.61
RTF1Q92541 CFL2-205ENST00000555765 632 ntTSL 2 BASIC25.12■■□□□ 1.61
RTF1Q92541 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
RTF1Q92541 AL023803.3-201ENST00000615559 522 ntBASIC25.12■■□□□ 1.61
RTF1Q92541 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC25.12■■□□□ 1.61
RTF1Q92541 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
RTF1Q92541 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC25.12■■□□□ 1.61
RTF1Q92541 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC25.12■■□□□ 1.61
RTF1Q92541 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RTF1Q92541 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC25.12■■□□□ 1.61
RTF1Q92541 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC25.12■■□□□ 1.61
RTF1Q92541 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
RTF1Q92541 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
RTF1Q92541 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC25.11■■□□□ 1.61
RTF1Q92541 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
RTF1Q92541 STX6-204ENST00000542060 4809 ntTSL 2 BASIC25.11■■□□□ 1.61
RTF1Q92541 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC25.11■■□□□ 1.61
RTF1Q92541 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RTF1Q92541 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RTF1Q92541 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RTF1Q92541 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
RTF1Q92541 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC25.11■■□□□ 1.61
RTF1Q92541 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC25.11■■□□□ 1.61
RTF1Q92541 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC25.11■■□□□ 1.61
RTF1Q92541 AC010653.2-201ENST00000623505 997 ntBASIC25.11■■□□□ 1.61
RTF1Q92541 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RTF1Q92541 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
RTF1Q92541 AC092338.2-201ENST00000568827 1415 ntBASIC25.11■■□□□ 1.61
RTF1Q92541 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms