Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 AC093525.10-201ENST00000625130 1569 ntBASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 KRT18P24-201ENST00000344739 1156 ntBASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 STX4-202ENST00000394998 1498 ntTSL 2 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN3Q8NCR9 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 AC092850.2-201ENST00000623821 2697 ntBASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.37■□□□□ 0.05
CLRN3Q8NCR9 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 PCDH8P1-201ENST00000428983 2773 ntBASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 DPP3P2-201ENST00000416030 1696 ntBASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 Z92544.1-202ENST00000571933 1220 ntBASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 FER1L4-210ENST00000615531 5998 ntBASIC15.36■□□□□ 0.05
CLRN3Q8NCR9 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms