Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 TFP1-202ENST00000475455 1573 ntBASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 Z98044.1-201ENST00000632503 1764 ntBASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 CYP2T1P-201ENST00000432607 1285 ntBASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUDCD3Q8IVD9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 AC018470.1-201ENST00000624790 3129 ntBASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 AC093525.10-201ENST00000625130 1569 ntBASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 AC010980.2-201ENST00000587099 1412 ntBASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 FP475955.4-201ENST00000623131 1990 ntBASIC19.12■□□□□ 0.65
NUDCD3Q8IVD9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUDCD3Q8IVD9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms