Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 CYP2T3P-201ENST00000601990 817 ntBASIC17.19■□□□□ 0.34
CCDC58Q4VC31 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CCDC58Q4VC31 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 MIR638-201ENST00000385237 100 ntBASIC17.17■□□□□ 0.34
CCDC58Q4VC31 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 C2orf69P4-201ENST00000565394 541 ntBASIC17.17■□□□□ 0.34
CCDC58Q4VC31 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
CCDC58Q4VC31 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC58Q4VC31 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC58Q4VC31 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC58Q4VC31 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC58Q4VC31 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CCDC58Q4VC31 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
CCDC58Q4VC31 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC58Q4VC31 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CCDC58Q4VC31 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CCDC58Q4VC31 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms