Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.36■□□□□ 0.37
LSM3P62310 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
LSM3P62310 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.36■□□□□ 0.37
LSM3P62310 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.36■□□□□ 0.37
LSM3P62310 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 KRT16P6-202ENST00000425692 1426 ntBASIC17.36■□□□□ 0.37
LSM3P62310 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LSM3P62310 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LSM3P62310 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LSM3P62310 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.35■□□□□ 0.37
LSM3P62310 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
LSM3P62310 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
LSM3P62310 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
LSM3P62310 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LSM3P62310 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LSM3P62310 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
LSM3P62310 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LSM3P62310 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LSM3P62310 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LSM3P62310 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
LSM3P62310 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC17.35■□□□□ 0.37
LSM3P62310 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LSM3P62310 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
LSM3P62310 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
LSM3P62310 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.35■□□□□ 0.37
LSM3P62310 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
LSM3P62310 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LSM3P62310 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LSM3P62310 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LSM3P62310 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LSM3P62310 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.34■□□□□ 0.37
LSM3P62310 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
LSM3P62310 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.34■□□□□ 0.37
LSM3P62310 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.34■□□□□ 0.37
LSM3P62310 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.34■□□□□ 0.37
LSM3P62310 KRT8P17-201ENST00000453110 1448 ntBASIC17.34■□□□□ 0.37
LSM3P62310 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.34■□□□□ 0.37
LSM3P62310 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.34■□□□□ 0.37
LSM3P62310 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.34■□□□□ 0.37
LSM3P62310 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.34■□□□□ 0.37
LSM3P62310 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC17.34■□□□□ 0.37
LSM3P62310 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LSM3P62310 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC17.34■□□□□ 0.37
LSM3P62310 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LSM3P62310 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
LSM3P62310 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LSM3P62310 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LSM3P62310 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LSM3P62310 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LSM3P62310 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
LSM3P62310 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LSM3P62310 ABALON-201ENST00000629058 1903 ntBASIC17.33■□□□□ 0.37
LSM3P62310 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
LSM3P62310 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
LSM3P62310 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.33■□□□□ 0.37
LSM3P62310 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LSM3P62310 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LSM3P62310 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LSM3P62310 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.33■□□□□ 0.37
LSM3P62310 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.33■□□□□ 0.36
LSM3P62310 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
LSM3P62310 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC17.33■□□□□ 0.36
LSM3P62310 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.33■□□□□ 0.36
LSM3P62310 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.33■□□□□ 0.36
LSM3P62310 MIR4767-201ENST00000582827 78 ntBASIC17.33■□□□□ 0.36
LSM3P62310 MIR4466-201ENST00000606121 54 ntBASIC17.33■□□□□ 0.36
LSM3P62310 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
LSM3P62310 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms