Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SRP54P61011 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SRP54P61011 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19■□□□□ 0.63
SRP54P61011 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SRP54P61011 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SRP54P61011 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SRP54P61011 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SRP54P61011 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.99■□□□□ 0.63
SRP54P61011 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SRP54P61011 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.99■□□□□ 0.63
SRP54P61011 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.99■□□□□ 0.63
SRP54P61011 KRT18P57-201ENST00000443599 1254 ntBASIC18.99■□□□□ 0.63
SRP54P61011 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.99■□□□□ 0.63
SRP54P61011 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.99■□□□□ 0.63
SRP54P61011 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.99■□□□□ 0.63
SRP54P61011 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.99■□□□□ 0.63
SRP54P61011 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.99■□□□□ 0.63
SRP54P61011 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SRP54P61011 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.99■□□□□ 0.63
SRP54P61011 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SRP54P61011 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SRP54P61011 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SRP54P61011 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.99■□□□□ 0.63
SRP54P61011 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SRP54P61011 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.99■□□□□ 0.63
SRP54P61011 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.99■□□□□ 0.63
SRP54P61011 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.99■□□□□ 0.63
SRP54P61011 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SRP54P61011 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.99■□□□□ 0.63
SRP54P61011 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SRP54P61011 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SRP54P61011 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.98■□□□□ 0.63
SRP54P61011 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SRP54P61011 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.98■□□□□ 0.63
SRP54P61011 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.98■□□□□ 0.63
SRP54P61011 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.98■□□□□ 0.63
SRP54P61011 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
SRP54P61011 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.98■□□□□ 0.63
SRP54P61011 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.98■□□□□ 0.63
SRP54P61011 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.98■□□□□ 0.63
SRP54P61011 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SRP54P61011 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SRP54P61011 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SRP54P61011 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SRP54P61011 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SRP54P61011 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SRP54P61011 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.97■□□□□ 0.63
SRP54P61011 KRT8P41-201ENST00000533985 1514 ntBASIC18.97■□□□□ 0.63
SRP54P61011 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.97■□□□□ 0.63
SRP54P61011 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SRP54P61011 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SRP54P61011 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.97■□□□□ 0.63
SRP54P61011 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.97■□□□□ 0.63
SRP54P61011 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SRP54P61011 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SRP54P61011 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SRP54P61011 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SRP54P61011 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SRP54P61011 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SRP54P61011 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SRP54P61011 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SRP54P61011 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.97■□□□□ 0.63
SRP54P61011 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SRP54P61011 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SRP54P61011 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.96■□□□□ 0.63
SRP54P61011 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.96■□□□□ 0.63
SRP54P61011 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.96■□□□□ 0.63
SRP54P61011 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SRP54P61011 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SRP54P61011 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.96■□□□□ 0.63
SRP54P61011 INGX-201ENST00000359239 846 ntBASIC18.96■□□□□ 0.63
SRP54P61011 LIN28AP1-201ENST00000429574 405 ntBASIC18.96■□□□□ 0.63
SRP54P61011 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.96■□□□□ 0.63
SRP54P61011 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.96■□□□□ 0.63
SRP54P61011 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SRP54P61011 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.96■□□□□ 0.63
SRP54P61011 AC116562.4-202ENST00000641738 218 ntBASIC18.96■□□□□ 0.63
SRP54P61011 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SRP54P61011 AC073508.3-201ENST00000619697 1419 ntBASIC18.96■□□□□ 0.63
SRP54P61011 AC112907.3-201ENST00000577781 2400 ntBASIC18.96■□□□□ 0.63
SRP54P61011 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SRP54P61011 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SRP54P61011 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SRP54P61011 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SRP54P61011 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.96■□□□□ 0.63
SRP54P61011 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.96■□□□□ 0.63
SRP54P61011 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.96■□□□□ 0.63
SRP54P61011 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SRP54P61011 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.96■□□□□ 0.63
SRP54P61011 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms