Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
LIG3P49916 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LIG3P49916 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.17■□□□□ 0.82
LIG3P49916 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.17■□□□□ 0.82
LIG3P49916 AC005829.2-201ENST00000571422 1056 ntBASIC20.17■□□□□ 0.82
LIG3P49916 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
LIG3P49916 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.17■□□□□ 0.82
LIG3P49916 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
LIG3P49916 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
LIG3P49916 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.16■□□□□ 0.82
LIG3P49916 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
LIG3P49916 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
LIG3P49916 AL138781.2-201ENST00000617896 1843 ntBASIC20.16■□□□□ 0.82
LIG3P49916 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.16■□□□□ 0.82
LIG3P49916 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.16■□□□□ 0.82
LIG3P49916 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
LIG3P49916 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 AC128676.1-201ENST00000454392 318 ntBASIC20.16■□□□□ 0.82
LIG3P49916 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.16■□□□□ 0.82
LIG3P49916 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.16■□□□□ 0.82
LIG3P49916 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.16■□□□□ 0.82
LIG3P49916 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
LIG3P49916 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.16■□□□□ 0.82
LIG3P49916 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
LIG3P49916 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.16■□□□□ 0.82
LIG3P49916 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
LIG3P49916 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.16■□□□□ 0.82
LIG3P49916 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.16■□□□□ 0.82
LIG3P49916 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.16■□□□□ 0.82
LIG3P49916 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.16■□□□□ 0.82
LIG3P49916 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIG3P49916 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.16■□□□□ 0.82
LIG3P49916 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.15■□□□□ 0.82
LIG3P49916 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.15■□□□□ 0.82
LIG3P49916 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIG3P49916 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIG3P49916 PRORSD1P-201ENST00000295112 541 ntBASIC20.15■□□□□ 0.82
LIG3P49916 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIG3P49916 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.15■□□□□ 0.82
LIG3P49916 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.15■□□□□ 0.82
LIG3P49916 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.15■□□□□ 0.82
LIG3P49916 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
LIG3P49916 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIG3P49916 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.15■□□□□ 0.82
LIG3P49916 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.15■□□□□ 0.82
LIG3P49916 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.15■□□□□ 0.82
LIG3P49916 AC006557.6-201ENST00000623071 864 ntBASIC20.15■□□□□ 0.82
LIG3P49916 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIG3P49916 AIRN-201ENST00000601203 4374 ntBASIC20.15■□□□□ 0.82
LIG3P49916 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.15■□□□□ 0.82
LIG3P49916 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIG3P49916 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.15■□□□□ 0.82
LIG3P49916 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIG3P49916 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIG3P49916 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.15■□□□□ 0.82
LIG3P49916 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIG3P49916 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
LIG3P49916 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.14■□□□□ 0.81
LIG3P49916 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIG3P49916 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.14■□□□□ 0.81
LIG3P49916 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.14■□□□□ 0.81
LIG3P49916 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
LIG3P49916 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIG3P49916 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIG3P49916 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIG3P49916 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms