Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.12■□□□□ 0.49
SOX3P41225 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 AL691432.2-201ENST00000607222 2038 ntBASIC18.12■□□□□ 0.49
SOX3P41225 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.12■□□□□ 0.49
SOX3P41225 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.12■□□□□ 0.49
SOX3P41225 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.12■□□□□ 0.49
SOX3P41225 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.12■□□□□ 0.49
SOX3P41225 AL049637.2-201ENST00000641778 930 ntBASIC18.12■□□□□ 0.49
SOX3P41225 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
SOX3P41225 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SOX3P41225 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SOX3P41225 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SOX3P41225 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.11■□□□□ 0.49
SOX3P41225 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SOX3P41225 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SOX3P41225 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
SOX3P41225 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 YBX1P10-201ENST00000444752 975 ntBASIC18.11■□□□□ 0.49
SOX3P41225 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.11■□□□□ 0.49
SOX3P41225 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SOX3P41225 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.11■□□□□ 0.49
SOX3P41225 MIR4497-201ENST00000583208 89 ntBASIC18.11■□□□□ 0.49
SOX3P41225 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.11■□□□□ 0.49
SOX3P41225 AP001412.1-201ENST00000608405 714 ntBASIC18.11■□□□□ 0.49
SOX3P41225 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.11■□□□□ 0.49
SOX3P41225 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
SOX3P41225 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
SOX3P41225 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SOX3P41225 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SOX3P41225 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
SOX3P41225 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.11■□□□□ 0.49
SOX3P41225 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.11■□□□□ 0.49
SOX3P41225 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.11■□□□□ 0.49
SOX3P41225 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SOX3P41225 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.1■□□□□ 0.49
SOX3P41225 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.1■□□□□ 0.49
SOX3P41225 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.1■□□□□ 0.49
SOX3P41225 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.1■□□□□ 0.49
SOX3P41225 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.1■□□□□ 0.49
SOX3P41225 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.1■□□□□ 0.49
SOX3P41225 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SOX3P41225 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SOX3P41225 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.1■□□□□ 0.49
SOX3P41225 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.1■□□□□ 0.49
SOX3P41225 AF186192.3-201ENST00000583427 947 ntBASIC18.1■□□□□ 0.49
SOX3P41225 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 AC113410.3-201ENST00000623366 203 ntBASIC18.1■□□□□ 0.49
SOX3P41225 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.1■□□□□ 0.49
SOX3P41225 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SOX3P41225 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.1■□□□□ 0.49
SOX3P41225 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
SOX3P41225 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SOX3P41225 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SOX3P41225 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.09■□□□□ 0.49
SOX3P41225 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
SOX3P41225 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.09■□□□□ 0.49
SOX3P41225 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.09■□□□□ 0.49
SOX3P41225 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
SOX3P41225 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
SOX3P41225 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.09■□□□□ 0.49
SOX3P41225 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 AC093484.2-201ENST00000580996 2166 ntBASIC18.09■□□□□ 0.49
SOX3P41225 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SOX3P41225 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms