Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
SDC1P18827 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
SDC1P18827 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
SDC1P18827 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.35■□□□□ 0.53
SDC1P18827 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
SDC1P18827 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.35■□□□□ 0.53
SDC1P18827 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.35■□□□□ 0.53
SDC1P18827 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SDC1P18827 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.35■□□□□ 0.53
SDC1P18827 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.35■□□□□ 0.53
SDC1P18827 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.35■□□□□ 0.53
SDC1P18827 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.35■□□□□ 0.53
SDC1P18827 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.35■□□□□ 0.53
SDC1P18827 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.35■□□□□ 0.53
SDC1P18827 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
SDC1P18827 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SDC1P18827 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.35■□□□□ 0.53
SDC1P18827 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.35■□□□□ 0.53
SDC1P18827 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC1P18827 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SDC1P18827 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
SDC1P18827 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.34■□□□□ 0.53
SDC1P18827 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SDC1P18827 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SDC1P18827 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.34■□□□□ 0.53
SDC1P18827 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
SDC1P18827 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.34■□□□□ 0.53
SDC1P18827 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.34■□□□□ 0.53
SDC1P18827 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC1P18827 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SDC1P18827 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SDC1P18827 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SDC1P18827 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.33■□□□□ 0.53
SDC1P18827 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.33■□□□□ 0.53
SDC1P18827 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SDC1P18827 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SDC1P18827 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SDC1P18827 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.33■□□□□ 0.52
SDC1P18827 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC1P18827 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SDC1P18827 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SDC1P18827 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.33■□□□□ 0.52
SDC1P18827 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC1P18827 HLA-L-209ENST00000420110 1011 ntBASIC18.33■□□□□ 0.52
SDC1P18827 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC1P18827 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.33■□□□□ 0.52
SDC1P18827 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.33■□□□□ 0.52
SDC1P18827 AC008403.3-201ENST00000598924 454 ntBASIC18.33■□□□□ 0.52
SDC1P18827 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.33■□□□□ 0.52
SDC1P18827 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SDC1P18827 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC1P18827 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.33■□□□□ 0.52
SDC1P18827 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.33■□□□□ 0.52
SDC1P18827 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC1P18827 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SDC1P18827 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.32■□□□□ 0.52
SDC1P18827 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.32■□□□□ 0.52
SDC1P18827 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC1P18827 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.32■□□□□ 0.52
SDC1P18827 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.32■□□□□ 0.52
SDC1P18827 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.32■□□□□ 0.52
SDC1P18827 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC1P18827 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.32■□□□□ 0.52
SDC1P18827 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.32■□□□□ 0.52
SDC1P18827 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.32■□□□□ 0.52
SDC1P18827 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.32■□□□□ 0.52
SDC1P18827 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.32■□□□□ 0.52
SDC1P18827 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.32■□□□□ 0.52
SDC1P18827 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SDC1P18827 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms