Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 BX276092.2-201ENST00000417668 665 ntBASIC17.32■□□□□ 0.36
HLA-DPB1P04440 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 AL031963.3-201ENST00000606441 850 ntBASIC17.32■□□□□ 0.36
HLA-DPB1P04440 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 AC006333.2-201ENST00000607957 2099 ntBASIC17.32■□□□□ 0.36
HLA-DPB1P04440 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DPB1P04440 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 KRT8P20-201ENST00000423953 1409 ntBASIC17.31■□□□□ 0.36
HLA-DPB1P04440 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.31■□□□□ 0.36
HLA-DPB1P04440 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 LSM12P1-201ENST00000411836 588 ntBASIC17.3■□□□□ 0.36
HLA-DPB1P04440 TSPY6P-201ENST00000448518 926 ntBASIC17.3■□□□□ 0.36
HLA-DPB1P04440 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 AC105020.6-201ENST00000621523 1217 ntBASIC17.3■□□□□ 0.36
HLA-DPB1P04440 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DPB1P04440 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 SLC29A4P1-201ENST00000398760 971 ntBASIC17.29■□□□□ 0.36
HLA-DPB1P04440 MIPEPP3-201ENST00000412105 444 ntBASIC17.29■□□□□ 0.36
HLA-DPB1P04440 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.29■□□□□ 0.36
HLA-DPB1P04440 AL589743.5-201ENST00000616611 1050 ntBASIC17.29■□□□□ 0.36
HLA-DPB1P04440 AL109923.1-201ENST00000618799 583 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms