Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC24.33■■□□□ 1.48
CACNA1FO60840 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
CACNA1FO60840 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
CACNA1FO60840 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC24.33■■□□□ 1.48
CACNA1FO60840 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC24.33■■□□□ 1.48
CACNA1FO60840 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC24.33■■□□□ 1.48
CACNA1FO60840 AC130371.2-201ENST00000619443 611 ntBASIC24.33■■□□□ 1.48
CACNA1FO60840 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
CACNA1FO60840 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CACNA1FO60840 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC24.32■■□□□ 1.48
CACNA1FO60840 PCDHAC2-203ENST00000615316 3011 ntBASIC24.32■■□□□ 1.48
CACNA1FO60840 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC24.32■■□□□ 1.48
CACNA1FO60840 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
CACNA1FO60840 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
CACNA1FO60840 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC24.32■■□□□ 1.48
CACNA1FO60840 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC24.32■■□□□ 1.48
CACNA1FO60840 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC24.32■■□□□ 1.48
CACNA1FO60840 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CACNA1FO60840 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC24.32■■□□□ 1.48
CACNA1FO60840 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC24.32■■□□□ 1.48
CACNA1FO60840 LINC01568-207ENST00000641790 1380 ntBASIC24.32■■□□□ 1.48
CACNA1FO60840 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
CACNA1FO60840 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CACNA1FO60840 FP475955.4-201ENST00000623131 1990 ntBASIC24.31■■□□□ 1.48
CACNA1FO60840 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC24.31■■□□□ 1.48
CACNA1FO60840 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC24.31■■□□□ 1.48
CACNA1FO60840 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CACNA1FO60840 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC24.31■■□□□ 1.48
CACNA1FO60840 AP003041.3-201ENST00000527151 707 ntBASIC24.31■■□□□ 1.48
CACNA1FO60840 AC093484.2-201ENST00000580996 2166 ntBASIC24.31■■□□□ 1.48
CACNA1FO60840 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CACNA1FO60840 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC24.31■■□□□ 1.48
CACNA1FO60840 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CACNA1FO60840 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC24.31■■□□□ 1.48
CACNA1FO60840 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CACNA1FO60840 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC24.31■■□□□ 1.48
CACNA1FO60840 HMGA1P5-201ENST00000412453 271 ntBASIC24.31■■□□□ 1.48
CACNA1FO60840 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC24.31■■□□□ 1.48
CACNA1FO60840 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
CACNA1FO60840 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CACNA1FO60840 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC24.31■■□□□ 1.48
CACNA1FO60840 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CACNA1FO60840 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC24.3■■□□□ 1.48
CACNA1FO60840 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CACNA1FO60840 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC24.3■■□□□ 1.48
CACNA1FO60840 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CACNA1FO60840 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC24.3■■□□□ 1.48
CACNA1FO60840 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC24.3■■□□□ 1.48
CACNA1FO60840 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC24.3■■□□□ 1.48
CACNA1FO60840 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC24.3■■□□□ 1.48
CACNA1FO60840 ECEL1P2-202ENST00000465689 757 ntBASIC24.3■■□□□ 1.48
CACNA1FO60840 NAPSB-206ENST00000562112 1266 ntBASIC24.3■■□□□ 1.48
CACNA1FO60840 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
CACNA1FO60840 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CACNA1FO60840 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CACNA1FO60840 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CACNA1FO60840 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CACNA1FO60840 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC24.3■■□□□ 1.48
CACNA1FO60840 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CACNA1FO60840 ARL16-209ENST00000573715 763 ntTSL 3 BASIC24.29■■□□□ 1.48
CACNA1FO60840 ARL16-211ENST00000576135 694 ntTSL 3 BASIC24.29■■□□□ 1.48
CACNA1FO60840 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
CACNA1FO60840 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CACNA1FO60840 UBQLN4P1-201ENST00000461599 1801 ntBASIC24.29■■□□□ 1.48
CACNA1FO60840 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.29■■□□□ 1.48
CACNA1FO60840 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CACNA1FO60840 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CACNA1FO60840 KRT18P22-201ENST00000402024 1347 ntBASIC24.29■■□□□ 1.48
CACNA1FO60840 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CACNA1FO60840 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC24.29■■□□□ 1.48
CACNA1FO60840 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC24.29■■□□□ 1.48
CACNA1FO60840 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.29■■□□□ 1.48
CACNA1FO60840 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC24.29■■□□□ 1.48
CACNA1FO60840 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CACNA1FO60840 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC24.29■■□□□ 1.48
CACNA1FO60840 CCR12P-201ENST00000446203 998 ntBASIC24.29■■□□□ 1.48
CACNA1FO60840 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC24.29■■□□□ 1.48
CACNA1FO60840 AL023803.3-201ENST00000615559 522 ntBASIC24.29■■□□□ 1.48
CACNA1FO60840 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
CACNA1FO60840 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CACNA1FO60840 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC24.28■■□□□ 1.48
CACNA1FO60840 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CACNA1FO60840 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CACNA1FO60840 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC24.28■■□□□ 1.48
CACNA1FO60840 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
CACNA1FO60840 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
CACNA1FO60840 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC24.28■■□□□ 1.48
CACNA1FO60840 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
CACNA1FO60840 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC24.28■■□□□ 1.48
CACNA1FO60840 AC036111.1-201ENST00000533973 1582 ntBASIC24.28■■□□□ 1.48
CACNA1FO60840 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CACNA1FO60840 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CACNA1FO60840 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC24.28■■□□□ 1.48
CACNA1FO60840 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC24.28■■□□□ 1.48
CACNA1FO60840 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
CACNA1FO60840 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
CACNA1FO60840 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC24.27■■□□□ 1.48
CACNA1FO60840 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC24.27■■□□□ 1.48
CACNA1FO60840 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC24.27■■□□□ 1.48
CACNA1FO60840 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC24.27■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms