Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
HMGB3O15347 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 AC099791.1-201ENST00000416440 715 ntBASIC15.5■□□□□ 0.07
HMGB3O15347 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC15.5■□□□□ 0.07
HMGB3O15347 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC15.5■□□□□ 0.07
HMGB3O15347 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 SERP1-208ENST00000491660 830 ntTSL 2 BASIC15.5■□□□□ 0.07
HMGB3O15347 AC024257.2-201ENST00000549699 147 ntBASIC15.5■□□□□ 0.07
HMGB3O15347 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC15.5■□□□□ 0.07
HMGB3O15347 AC063926.3-201ENST00000624734 5658 ntBASIC15.5■□□□□ 0.07
HMGB3O15347 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC15.5■□□□□ 0.07
HMGB3O15347 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC15.5■□□□□ 0.07
HMGB3O15347 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
HMGB3O15347 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.49■□□□□ 0.07
HMGB3O15347 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC15.49■□□□□ 0.07
HMGB3O15347 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
HMGB3O15347 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGB3O15347 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HMGB3O15347 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGB3O15347 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
HMGB3O15347 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGB3O15347 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGB3O15347 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.49■□□□□ 0.07
HMGB3O15347 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 AC009237.14-201ENST00000609975 1594 ntBASIC15.49■□□□□ 0.07
HMGB3O15347 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB3O15347 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
HMGB3O15347 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGB3O15347 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.49■□□□□ 0.07
HMGB3O15347 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGB3O15347 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.48■□□□□ 0.07
HMGB3O15347 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HMGB3O15347 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
HMGB3O15347 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC15.48■□□□□ 0.07
HMGB3O15347 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
HMGB3O15347 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC15.48■□□□□ 0.07
HMGB3O15347 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGB3O15347 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
HMGB3O15347 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGB3O15347 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGB3O15347 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGB3O15347 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
HMGB3O15347 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HMGB3O15347 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGB3O15347 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
HMGB3O15347 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.48■□□□□ 0.07
HMGB3O15347 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB3O15347 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC15.47■□□□□ 0.07
HMGB3O15347 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms