Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CPSF4LA6NMK7 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
CPSF4LA6NMK7 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CPSF4LA6NMK7 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CPSF4LA6NMK7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CPSF4LA6NMK7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CPSF4LA6NMK7 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CPSF4LA6NMK7 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CPSF4LA6NMK7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 YBX1P10-201ENST00000444752 975 ntBASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 AC083880.1-201ENST00000608266 535 ntBASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 SDHAP1-207ENST00000440850 2000 ntBASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPSF4LA6NMK7 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 SOX15-203ENST00000570788 1093 ntBASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CPSF4LA6NMK7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 KRT8P8-201ENST00000434750 1448 ntBASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 AC104417.2-201ENST00000562989 1793 ntBASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms