Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 AC092338.2-201ENST00000568827 1415 ntBASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 AC010331.1-201ENST00000611423 582 ntBASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMIM28A0A1B0GU29 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 CA15P1-201ENST00000481698 905 ntBASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 AL353719.1-201ENST00000566847 864 ntBASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMIM28A0A1B0GU29 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 TSPY17P-201ENST00000450329 467 ntBASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 AC010653.2-201ENST00000623505 997 ntBASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SMIM28A0A1B0GU29 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.66■□□□□ 0.9
SMIM28A0A1B0GU29 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms