Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 POLI-202ENST00000406285 2030 ntTSL 2 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 RNF165-205ENST00000588679 2904 ntBASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 LINC01465-201ENST00000408887 1940 ntBASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 PPP1R14BP5-201ENST00000440334 435 ntBASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 PENK-204ENST00000518770 863 ntTSL 2 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 AC026271.3-201ENST00000571884 352 ntBASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 AC104417.2-201ENST00000562989 1793 ntBASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV41A0A0B4J266 SRI-203ENST00000419179 1307 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 AC004980.1-204ENST00000429707 299 ntBASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 AL355355.2-201ENST00000442321 338 ntBASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV41A0A0B4J266 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms