Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.05□□□□□ -1.92
COL6A3P12111 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.05□□□□□ -1.92
COL6A3P12111 AC009063.1-201ENST00000563342 702 ntBASIC3.05□□□□□ -1.92
COL6A3P12111 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.05□□□□□ -1.92
COL6A3P12111 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.05□□□□□ -1.92
COL6A3P12111 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.05□□□□□ -1.92
COL6A3P12111 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL6A3P12111 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL6A3P12111 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL6A3P12111 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL6A3P12111 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL6A3P12111 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL6A3P12111 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.05□□□□□ -1.92
COL6A3P12111 ELOCP18-201ENST00000434209 337 ntBASIC3.05□□□□□ -1.92
COL6A3P12111 TAF9P1-201ENST00000445421 515 ntBASIC3.05□□□□□ -1.92
COL6A3P12111 TAF9P2-201ENST00000454958 515 ntBASIC3.05□□□□□ -1.92
COL6A3P12111 MTND4P2-201ENST00000507767 1203 ntBASIC3.05□□□□□ -1.92
COL6A3P12111 RNA5SP480-201ENST00000516840 109 ntBASIC3.05□□□□□ -1.92
COL6A3P12111 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
COL6A3P12111 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL6A3P12111 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.05□□□□□ -1.92
COL6A3P12111 AL359715.4-201ENST00000606629 1436 ntBASIC3.05□□□□□ -1.92
COL6A3P12111 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.05□□□□□ -1.92
COL6A3P12111 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC3.05□□□□□ -1.92
COL6A3P12111 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC3.05□□□□□ -1.92
COL6A3P12111 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.05□□□□□ -1.92
COL6A3P12111 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC3.05□□□□□ -1.92
COL6A3P12111 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.04□□□□□ -1.92
COL6A3P12111 AL353729.1-201ENST00000425044 720 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.04□□□□□ -1.92
COL6A3P12111 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.04□□□□□ -1.92
COL6A3P12111 RPL12P18-201ENST00000437175 325 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
COL6A3P12111 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
COL6A3P12111 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
COL6A3P12111 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.04□□□□□ -1.92
COL6A3P12111 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 NPM1P38-201ENST00000403835 865 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 FCF1P3-201ENST00000496394 590 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.04□□□□□ -1.92
COL6A3P12111 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
COL6A3P12111 AC010198.2-201ENST00000550612 259 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.04□□□□□ -1.92
COL6A3P12111 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC3.04□□□□□ -1.92
COL6A3P12111 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
COL6A3P12111 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.04□□□□□ -1.92
COL6A3P12111 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
COL6A3P12111 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
COL6A3P12111 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 AL139039.1-201ENST00000401900 692 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 RNU4-53P-201ENST00000410828 140 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 RPL5P30-201ENST00000465511 891 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 NPM1P29-201ENST00000483112 803 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 RPL7P20-201ENST00000520308 745 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.04□□□□□ -1.92
COL6A3P12111 OR4U1P-201ENST00000554958 912 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 MIR1273D-201ENST00000577266 86 ntBASIC3.04□□□□□ -1.92
COL6A3P12111 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL6A3P12111 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
COL6A3P12111 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL6A3P12111 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL6A3P12111 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.03□□□□□ -1.92
COL6A3P12111 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.03□□□□□ -1.92
COL6A3P12111 Y_RNA.112-201ENST00000363250 102 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 SNORA80E-201ENST00000384744 137 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.03□□□□□ -1.92
COL6A3P12111 SCARNA20.6-201ENST00000517251 106 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 UBTFL9-201ENST00000534504 1148 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 AC090695.1-201ENST00000561269 1222 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.03□□□□□ -1.92
COL6A3P12111 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL6A3P12111 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL6A3P12111 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL6A3P12111 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.03□□□□□ -1.92
COL6A3P12111 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC3.03□□□□□ -1.92
COL6A3P12111 AC006020.1-201ENST00000420179 1854 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL6A3P12111 RNU6-14P-201ENST00000384630 106 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 SNORA64-201ENST00000384674 134 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.03□□□□□ -1.92
COL6A3P12111 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.03□□□□□ -1.92
COL6A3P12111 AC005921.1-201ENST00000510589 286 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.03□□□□□ -1.92
COL6A3P12111 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.03□□□□□ -1.92
COL6A3P12111 AC020895.1-201ENST00000595362 272 ntBASIC3.03□□□□□ -1.92
COL6A3P12111 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL6A3P12111 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms