Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS39Q96JC1 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS39Q96JC1 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 RNU6-335P-201ENST00000364563 113 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 SNORA51.2-201ENST00000364595 132 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS39Q96JC1 ZNF603P-201ENST00000405613 487 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 RN7SKP56-201ENST00000410513 331 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 RN7SKP33-201ENST00000410942 340 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC016397.1-201ENST00000412463 242 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 USP12PY-201ENST00000427677 1064 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 RPL36P19-201ENST00000430744 301 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 HMGB1P37-201ENST00000439613 609 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 DNAJC19P8-201ENST00000452887 259 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 MTND2P30-201ENST00000456663 382 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 RN7SL860P-201ENST00000473738 223 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC087879.1-201ENST00000474343 374 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS39Q96JC1 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 UBE2CP3-201ENST00000502715 450 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC010342.1-201ENST00000514047 877 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 RNU6-488P-201ENST00000515918 99 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC091515.1-201ENST00000548110 679 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC107016.1-201ENST00000550463 337 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 EIF5A2P1-201ENST00000564027 460 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 AF230666.2-201ENST00000602328 725 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC119501.1-201ENST00000603646 475 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 AL512506.1-201ENST00000613918 449 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 AL359715.5-201ENST00000623431 443 ntBASIC3.97□□□□□ -1.77
VPS39Q96JC1 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS39Q96JC1 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS39Q96JC1 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS39Q96JC1 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
VPS39Q96JC1 AL627171.1-201ENST00000618845 1308 ntBASIC3.96□□□□□ -1.77
VPS39Q96JC1 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.96□□□□□ -1.77
VPS39Q96JC1 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
VPS39Q96JC1 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS39Q96JC1 AP001148.1-201ENST00000624124 2359 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS39Q96JC1 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 RNU6-600P-201ENST00000362524 99 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 RNA5SP399-201ENST00000364003 117 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS39Q96JC1 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 OR6C69P-201ENST00000394268 893 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 TPT1P2-201ENST00000413105 503 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC017083.1-201ENST00000428093 483 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC073508.1-201ENST00000428866 656 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS39Q96JC1 RPL17P35-201ENST00000432217 549 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC083863.1-201ENST00000438811 231 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 H2AFZP6-201ENST00000444403 394 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 CFTRP1-201ENST00000456646 183 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC010307.1-201ENST00000467206 836 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC078785.3-201ENST00000476607 425 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC105137.1-201ENST00000484355 562 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC133963.2-201ENST00000513686 578 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 MTCYBP41-201ENST00000528913 1123 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC091516.1-201ENST00000549191 703 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 OR4G1P-201ENST00000588632 938 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC079880.2-201ENST00000603790 1213 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 MIR486-1-201ENST00000612171 68 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC005156.1-201ENST00000613371 573 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC073569.3-201ENST00000619055 682 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC112200.1-201ENST00000625015 234 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS39Q96JC1 AC024341.1-201ENST00000526444 1552 ntBASIC3.96□□□□□ -1.78
VPS39Q96JC1 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS39Q96JC1 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS39Q96JC1 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS39Q96JC1 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS39Q96JC1 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms