Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 AC116351.2-201ENST00000606540 1585 ntBASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 AL390955.1-201ENST00000428694 934 ntBASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA3Q9Y5H0 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 AC020907.5-201ENST00000624372 1936 ntBASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 AL137013.1-201ENST00000432946 1228 ntBASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 YBX1P10-201ENST00000444752 975 ntBASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 DGCR10-201ENST00000609839 495 ntBASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 AC073508.3-201ENST00000619697 1419 ntBASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA3Q9Y5H0 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 TERF1P1-201ENST00000311003 1181 ntBASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 ARMC10P1-201ENST00000313754 855 ntBASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 AP005242.2-201ENST00000580065 1175 ntBASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 TFP1-202ENST00000475455 1573 ntBASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA3Q9Y5H0 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 BX323043.1-201ENST00000641006 1765 ntBASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 MESTP1-201ENST00000404287 994 ntBASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 SLC25A3P1-201ENST00000443844 931 ntBASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 KRT18P16-201ENST00000510337 1294 ntBASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 KRT16P6-202ENST00000425692 1426 ntBASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA3Q9Y5H0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA3Q9Y5H0 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms