Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HIF3AQ9Y2N7 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 TUBB8P6-201ENST00000436895 1288 ntBASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 AL161938.1-201ENST00000569833 2180 ntBASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIF3AQ9Y2N7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 SDHAP1-207ENST00000440850 2000 ntBASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HIF3AQ9Y2N7 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 POM121L13P-201ENST00000422362 380 ntBASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 UNC93B5-201ENST00000530315 699 ntBASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 AC004408.2-201ENST00000623613 2777 ntBASIC17.4■□□□□ 0.38
HIF3AQ9Y2N7 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.39■□□□□ 0.38
HIF3AQ9Y2N7 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
HIF3AQ9Y2N7 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 RNF165-205ENST00000588679 2904 ntBASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 AL355802.2-201ENST00000402069 882 ntBASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIF3AQ9Y2N7 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms