Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 TUBB8P6-201ENST00000436895 1288 ntBASIC17.23■□□□□ 0.35
VSX1Q9NZR4 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VSX1Q9NZR4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 AL161938.1-201ENST00000569833 2180 ntBASIC17.22■□□□□ 0.35
VSX1Q9NZR4 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VSX1Q9NZR4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 UNC93B5-201ENST00000530315 699 ntBASIC17.21■□□□□ 0.35
VSX1Q9NZR4 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 SDHAP1-207ENST00000440850 2000 ntBASIC17.21■□□□□ 0.35
VSX1Q9NZR4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VSX1Q9NZR4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 AL020996.1-203ENST00000536896 2307 ntBASIC17.2■□□□□ 0.34
VSX1Q9NZR4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 POM121L13P-201ENST00000422362 380 ntBASIC17.2■□□□□ 0.34
VSX1Q9NZR4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VSX1Q9NZR4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms