Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RPAP3Q9H6T3 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RPAP3Q9H6T3 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RPAP3Q9H6T3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
RPAP3Q9H6T3 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RPAP3Q9H6T3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 Telomerase-vert.1-201ENST00000363312 438 ntBASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 NMU-205ENST00000511469 756 ntTSL 3 BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 ETFA-216ENST00000560726 942 ntTSL 3 BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
RPAP3Q9H6T3 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 AC104417.2-201ENST00000562989 1793 ntBASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 CD320-202ENST00000537716 1119 ntTSL 2 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC22.22■■□□□ 1.15
RPAP3Q9H6T3 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 PHB2-202ENST00000440277 996 ntTSL 5 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 KRT18P38-201ENST00000449496 1282 ntBASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 FAM86EP-206ENST00000510506 987 ntBASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 NT5C-210ENST00000582160 860 ntTSL 2 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 DBP-204ENST00000599385 709 ntTSL 3 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 AL121956.5-201ENST00000625261 221 ntBASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 AP000550.4-202ENST00000639755 178 ntBASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPAP3Q9H6T3 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.15
RPAP3Q9H6T3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 TCF3P1-201ENST00000423021 1937 ntBASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 AL671277.2-201ENST00000458060 996 ntBASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 AC008622.2-201ENST00000617006 1229 ntBASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
RPAP3Q9H6T3 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms