Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 AC243591.1-201ENST00000452967 1364 ntBASIC19.13■□□□□ 0.65
VPS13AQ96RL7 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 AL121912.1-201ENST00000603683 238 ntBASIC19.13■□□□□ 0.65
VPS13AQ96RL7 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS13AQ96RL7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 AC133561.1-201ENST00000568600 2415 ntBASIC19.12■□□□□ 0.65
VPS13AQ96RL7 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 KRT18P58-201ENST00000527480 1120 ntBASIC19.12■□□□□ 0.65
VPS13AQ96RL7 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 TSSC2-201ENST00000450217 709 ntBASIC19.12■□□□□ 0.65
VPS13AQ96RL7 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS13AQ96RL7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 SAPCD2P3-201ENST00000455031 850 ntBASIC19.11■□□□□ 0.65
VPS13AQ96RL7 TPSP2-201ENST00000561760 610 ntBASIC19.11■□□□□ 0.65
VPS13AQ96RL7 AC027796.2-201ENST00000575326 344 ntBASIC19.11■□□□□ 0.65
VPS13AQ96RL7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13AQ96RL7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 CHCHD2P8-201ENST00000429873 447 ntBASIC19.1■□□□□ 0.65
VPS13AQ96RL7 RASA4DP-201ENST00000460726 1199 ntBASIC19.1■□□□□ 0.65
VPS13AQ96RL7 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 AL139424.1-201ENST00000607572 797 ntBASIC19.1■□□□□ 0.65
VPS13AQ96RL7 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 REXO1L6P-202ENST00000619970 1078 ntBASIC19.1■□□□□ 0.65
VPS13AQ96RL7 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13AQ96RL7 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 TMEM179-206ENST00000616017 1645 ntBASIC19.09■□□□□ 0.65
VPS13AQ96RL7 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 FOSL1P1-201ENST00000511041 816 ntBASIC19.09■□□□□ 0.65
VPS13AQ96RL7 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms