Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 AC011506.1-201ENST00000474329 610 ntBASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 USF2-205ENST00000594064 1179 ntTSL 2 BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 REXO1L10P-201ENST00000615707 1290 ntBASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
NKX2-3Q8TAU0 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.26
NKX2-3Q8TAU0 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.26
NKX2-3Q8TAU0 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
NKX2-3Q8TAU0 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
NKX2-3Q8TAU0 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 Z85996.1-201ENST00000494644 937 ntBASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 AC093484.2-201ENST00000580996 2166 ntBASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
NKX2-3Q8TAU0 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 TPM4P1-201ENST00000436100 807 ntBASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 AP002982.1-201ENST00000492365 877 ntBASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 TMA16-209ENST00000513272 803 ntTSL 2 BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 LTBR-211ENST00000543190 785 ntTSL 3 BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 FITM1-202ENST00000559294 800 ntBASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 AC091076.1-201ENST00000610741 619 ntBASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 AL445675.2-201ENST00000620291 557 ntBASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
NKX2-3Q8TAU0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 PPP1R14BP5-201ENST00000440334 435 ntBASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 NME1-207ENST00000480143 964 ntTSL 2 BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC22.87■■□□□ 1.25
NKX2-3Q8TAU0 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NKX2-3Q8TAU0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 UPK3BP1-201ENST00000428678 509 ntBASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 KSR1P1-201ENST00000446298 240 ntBASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms