Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 AC005521.1-201ENST00000393351 872 ntBASIC5.94□□□□□ -1.46
SYNE1Q8NF91 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 RPS15-203ENST00000586096 570 ntTSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 PPP1R14BP5-201ENST00000440334 435 ntBASIC5.94□□□□□ -1.46
SYNE1Q8NF91 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 GOLGA6L3-201ENST00000507199 1679 ntBASIC5.94□□□□□ -1.46
SYNE1Q8NF91 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 BID-203ENST00000399765 1879 ntTSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 BET1L-202ENST00000332865 533 ntTSL 5 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 AL355355.2-201ENST00000442321 338 ntBASIC5.94□□□□□ -1.46
SYNE1Q8NF91 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 AL049597.2-201ENST00000565575 961 ntBASIC5.94□□□□□ -1.46
SYNE1Q8NF91 HLA-A-209ENST00000638375 975 ntBASIC5.94□□□□□ -1.46
SYNE1Q8NF91 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 MIR2861-201ENST00000636310 90 ntBASIC5.94□□□□□ -1.46
SYNE1Q8NF91 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 SMG8-203ENST00000578922 2178 ntBASIC5.94□□□□□ -1.46
SYNE1Q8NF91 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AC116562.2-201ENST00000507042 360 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 LGALS8-AS1-201ENST00000487567 1457 ntBASIC5.93□□□□□ -1.46
SYNE1Q8NF91 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SYNE1Q8NF91 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms