Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 NAA38-203ENST00000575071 553 ntTSL 2 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC22.92■■□□□ 1.26
SMC1BQ8NDV3 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 AC027796.2-201ENST00000575326 344 ntBASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 SPEG-225ENST00000617028 815 ntTSL 5 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC22.91■■□□□ 1.26
SMC1BQ8NDV3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 MIR564-202ENST00000385049 94 ntBASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 RNPS1P1-201ENST00000507437 918 ntBASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 AC106730.1-201ENST00000566722 1090 ntBASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 AL773604.1-201ENST00000617417 272 ntBASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 ABBA01031661.1-201ENST00000634362 1253 ntBASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 TUB-203ENST00000534099 1759 ntTSL 2 BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 GOLGA2P6-201ENST00000340929 2049 ntBASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.9■■□□□ 1.26
SMC1BQ8NDV3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
SMC1BQ8NDV3 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
SMC1BQ8NDV3 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC22.89■■□□□ 1.26
SMC1BQ8NDV3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
SMC1BQ8NDV3 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
SMC1BQ8NDV3 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC22.89■■□□□ 1.26
SMC1BQ8NDV3 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC22.89■■□□□ 1.26
SMC1BQ8NDV3 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.89■■□□□ 1.26
SMC1BQ8NDV3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.89■■□□□ 1.26
SMC1BQ8NDV3 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 AKR1C7P-201ENST00000305623 895 ntBASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 ILF2-202ENST00000368681 726 ntTSL 2 BASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 C9orf163-202ENST00000624034 2573 ntBASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
SMC1BQ8NDV3 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 SAPCD2P3-201ENST00000455031 850 ntBASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 AC140113.2-201ENST00000604370 208 ntBASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms