Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.53■□□□□ 0.56
COL28A1Q2UY09 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 TSPY21P-201ENST00000433481 731 ntBASIC18.53■□□□□ 0.56
COL28A1Q2UY09 TSPY23P-201ENST00000440136 739 ntBASIC18.53■□□□□ 0.56
COL28A1Q2UY09 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 AC023632.3-201ENST00000521633 145 ntBASIC18.53■□□□□ 0.56
COL28A1Q2UY09 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 AC026271.3-201ENST00000571884 352 ntBASIC18.53■□□□□ 0.56
COL28A1Q2UY09 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.53■□□□□ 0.56
COL28A1Q2UY09 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 FEM1AP1-201ENST00000431297 1995 ntBASIC18.52■□□□□ 0.56
COL28A1Q2UY09 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.52■□□□□ 0.56
COL28A1Q2UY09 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.52■□□□□ 0.56
COL28A1Q2UY09 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 HOMER2P1-201ENST00000455653 964 ntBASIC18.52■□□□□ 0.56
COL28A1Q2UY09 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 AC130371.2-201ENST00000619443 611 ntBASIC18.52■□□□□ 0.56
COL28A1Q2UY09 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.52■□□□□ 0.56
COL28A1Q2UY09 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL28A1Q2UY09 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL28A1Q2UY09 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL28A1Q2UY09 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 AC092720.2-201ENST00000602388 1665 ntBASIC18.51■□□□□ 0.55
COL28A1Q2UY09 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 AC011506.1-201ENST00000474329 610 ntBASIC18.51■□□□□ 0.55
COL28A1Q2UY09 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 CR769767.2-201ENST00000622735 460 ntBASIC18.51■□□□□ 0.55
COL28A1Q2UY09 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 AC073314.1-201ENST00000568729 2216 ntBASIC18.51■□□□□ 0.55
COL28A1Q2UY09 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL28A1Q2UY09 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 KRT8P10-201ENST00000450021 1447 ntBASIC18.5■□□□□ 0.55
COL28A1Q2UY09 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 AC141257.4-201ENST00000634557 245 ntBASIC18.5■□□□□ 0.55
COL28A1Q2UY09 AC136944.6-201ENST00000634818 245 ntBASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms