Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN1P58418 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.25■□□□□ 0.35
CLRN1P58418 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN1P58418 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN1P58418 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.25■□□□□ 0.35
CLRN1P58418 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.25■□□□□ 0.35
CLRN1P58418 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN1P58418 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN1P58418 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
CLRN1P58418 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN1P58418 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN1P58418 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CLRN1P58418 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN1P58418 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN1P58418 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN1P58418 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN1P58418 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN1P58418 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN1P58418 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN1P58418 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN1P58418 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN1P58418 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN1P58418 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN1P58418 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN1P58418 MTDHP1-201ENST00000605323 784 ntBASIC17.24■□□□□ 0.35
CLRN1P58418 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN1P58418 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.24■□□□□ 0.35
CLRN1P58418 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CLRN1P58418 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.23■□□□□ 0.35
CLRN1P58418 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLRN1P58418 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLRN1P58418 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CLRN1P58418 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.23■□□□□ 0.35
CLRN1P58418 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CLRN1P58418 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
CLRN1P58418 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 AC239809.2-201ENST00000415381 517 ntBASIC17.23■□□□□ 0.35
CLRN1P58418 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.23■□□□□ 0.35
CLRN1P58418 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 AC233263.1-201ENST00000578059 224 ntBASIC17.23■□□□□ 0.35
CLRN1P58418 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.23■□□□□ 0.35
CLRN1P58418 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CLRN1P58418 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
CLRN1P58418 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CLRN1P58418 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN1P58418 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLRN1P58418 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CLRN1P58418 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLRN1P58418 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.22■□□□□ 0.35
CLRN1P58418 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CLRN1P58418 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CLRN1P58418 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
CLRN1P58418 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
CLRN1P58418 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.22■□□□□ 0.35
CLRN1P58418 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.22■□□□□ 0.35
CLRN1P58418 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.22■□□□□ 0.35
CLRN1P58418 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.22■□□□□ 0.35
CLRN1P58418 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.22■□□□□ 0.35
CLRN1P58418 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.22■□□□□ 0.35
CLRN1P58418 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.22■□□□□ 0.35
CLRN1P58418 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.22■□□□□ 0.35
CLRN1P58418 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.22■□□□□ 0.35
CLRN1P58418 AC006058.3-201ENST00000606217 1069 ntBASIC17.22■□□□□ 0.35
CLRN1P58418 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.22■□□□□ 0.35
CLRN1P58418 AL023875.1-201ENST00000640777 796 ntBASIC17.22■□□□□ 0.35
CLRN1P58418 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
CLRN1P58418 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN1P58418 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.22■□□□□ 0.35
CLRN1P58418 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CLRN1P58418 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CLRN1P58418 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN1P58418 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN1P58418 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms