Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.33■□□□□ 0.52
LIM2P55344 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.33■□□□□ 0.52
LIM2P55344 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.33■□□□□ 0.52
LIM2P55344 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LIM2P55344 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.33■□□□□ 0.52
LIM2P55344 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
LIM2P55344 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
LIM2P55344 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.32■□□□□ 0.52
LIM2P55344 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
LIM2P55344 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LIM2P55344 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.32■□□□□ 0.52
LIM2P55344 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 AP002982.1-201ENST00000492365 877 ntBASIC18.32■□□□□ 0.52
LIM2P55344 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.32■□□□□ 0.52
LIM2P55344 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.32■□□□□ 0.52
LIM2P55344 AL353708.3-201ENST00000610272 989 ntBASIC18.32■□□□□ 0.52
LIM2P55344 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 Z82202.1-201ENST00000623446 1880 ntBASIC18.32■□□□□ 0.52
LIM2P55344 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.32■□□□□ 0.52
LIM2P55344 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIM2P55344 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.31■□□□□ 0.52
LIM2P55344 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.31■□□□□ 0.52
LIM2P55344 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.31■□□□□ 0.52
LIM2P55344 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
LIM2P55344 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
LIM2P55344 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.31■□□□□ 0.52
LIM2P55344 NIFKP9-201ENST00000419265 221 ntBASIC18.31■□□□□ 0.52
LIM2P55344 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.31■□□□□ 0.52
LIM2P55344 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.31■□□□□ 0.52
LIM2P55344 AF186192.3-201ENST00000583427 947 ntBASIC18.31■□□□□ 0.52
LIM2P55344 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.31■□□□□ 0.52
LIM2P55344 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.31■□□□□ 0.52
LIM2P55344 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LIM2P55344 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.31■□□□□ 0.52
LIM2P55344 AC104417.2-201ENST00000562989 1793 ntBASIC18.31■□□□□ 0.52
LIM2P55344 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LIM2P55344 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LIM2P55344 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 AL135905.2-201ENST00000584934 1404 ntBASIC18.31■□□□□ 0.52
LIM2P55344 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIM2P55344 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.31■□□□□ 0.52
LIM2P55344 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.3■□□□□ 0.52
LIM2P55344 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
LIM2P55344 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.3■□□□□ 0.52
LIM2P55344 LINC01465-201ENST00000408887 1940 ntBASIC18.3■□□□□ 0.52
LIM2P55344 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LIM2P55344 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.3■□□□□ 0.52
LIM2P55344 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.3■□□□□ 0.52
LIM2P55344 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.3■□□□□ 0.52
LIM2P55344 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.3■□□□□ 0.52
LIM2P55344 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.3■□□□□ 0.52
LIM2P55344 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.3■□□□□ 0.52
LIM2P55344 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIM2P55344 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.3■□□□□ 0.52
LIM2P55344 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms