Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDH6P55285 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDH6P55285 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CDH6P55285 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CDH6P55285 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDH6P55285 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.08■□□□□ 0.81
CDH6P55285 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
CDH6P55285 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDH6P55285 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDH6P55285 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDH6P55285 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDH6P55285 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
CDH6P55285 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDH6P55285 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDH6P55285 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDH6P55285 POU5F1P3-201ENST00000428824 1078 ntBASIC20.08■□□□□ 0.81
CDH6P55285 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.08■□□□□ 0.81
CDH6P55285 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.08■□□□□ 0.81
CDH6P55285 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.08■□□□□ 0.81
CDH6P55285 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.08■□□□□ 0.81
CDH6P55285 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.08■□□□□ 0.81
CDH6P55285 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CDH6P55285 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
CDH6P55285 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CDH6P55285 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CDH6P55285 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
CDH6P55285 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CDH6P55285 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.07■□□□□ 0.8
CDH6P55285 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
CDH6P55285 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
CDH6P55285 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.07■□□□□ 0.8
CDH6P55285 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH6P55285 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH6P55285 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.07■□□□□ 0.8
CDH6P55285 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
CDH6P55285 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.07■□□□□ 0.8
CDH6P55285 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CDH6P55285 AC004264.1-201ENST00000608354 794 ntBASIC20.07■□□□□ 0.8
CDH6P55285 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.07■□□□□ 0.8
CDH6P55285 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH6P55285 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CDH6P55285 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CDH6P55285 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH6P55285 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH6P55285 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH6P55285 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH6P55285 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CDH6P55285 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CDH6P55285 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.06■□□□□ 0.8
CDH6P55285 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH6P55285 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CDH6P55285 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH6P55285 KRASP1-201ENST00000407852 552 ntBASIC20.06■□□□□ 0.8
CDH6P55285 AC239809.2-201ENST00000415381 517 ntBASIC20.06■□□□□ 0.8
CDH6P55285 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.06■□□□□ 0.8
CDH6P55285 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.06■□□□□ 0.8
CDH6P55285 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
CDH6P55285 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH6P55285 AC006058.3-201ENST00000606217 1069 ntBASIC20.06■□□□□ 0.8
CDH6P55285 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDH6P55285 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.06■□□□□ 0.8
CDH6P55285 AC141586.3-201ENST00000562166 1838 ntBASIC20.06■□□□□ 0.8
CDH6P55285 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.06■□□□□ 0.8
CDH6P55285 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CDH6P55285 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CDH6P55285 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.06■□□□□ 0.8
CDH6P55285 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH6P55285 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CDH6P55285 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.05■□□□□ 0.8
CDH6P55285 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.05■□□□□ 0.8
CDH6P55285 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.05■□□□□ 0.8
CDH6P55285 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
CDH6P55285 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.05■□□□□ 0.8
CDH6P55285 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.05■□□□□ 0.8
CDH6P55285 AC073648.6-201ENST00000641589 218 ntBASIC20.05■□□□□ 0.8
CDH6P55285 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.05■□□□□ 0.8
CDH6P55285 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.05■□□□□ 0.8
CDH6P55285 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDH6P55285 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDH6P55285 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.04■□□□□ 0.8
CDH6P55285 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH6P55285 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.04■□□□□ 0.8
CDH6P55285 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH6P55285 LINC01465-201ENST00000408887 1940 ntBASIC20.04■□□□□ 0.8
CDH6P55285 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CDH6P55285 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CDH6P55285 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CDH6P55285 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH6P55285 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH6P55285 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms