Protein–RNA interactions for Protein: P43005

SLC1A1, Excitatory amino acid transporter 3, humanhuman

Predictions only

Length 524 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC1A1P43005 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC1A1P43005 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC1A1P43005 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.22■□□□□ 0.83
SLC1A1P43005 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SLC1A1P43005 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC1A1P43005 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.22■□□□□ 0.83
SLC1A1P43005 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.22■□□□□ 0.83
SLC1A1P43005 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.22■□□□□ 0.83
SLC1A1P43005 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.22■□□□□ 0.83
SLC1A1P43005 AC104771.1-201ENST00000603335 964 ntBASIC20.22■□□□□ 0.83
SLC1A1P43005 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC1A1P43005 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.22■□□□□ 0.83
SLC1A1P43005 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC1A1P43005 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.22■□□□□ 0.83
SLC1A1P43005 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SLC1A1P43005 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
SLC1A1P43005 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SLC1A1P43005 AC006333.2-201ENST00000607957 2099 ntBASIC20.22■□□□□ 0.83
SLC1A1P43005 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.21■□□□□ 0.83
SLC1A1P43005 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC1A1P43005 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC1A1P43005 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.21■□□□□ 0.83
SLC1A1P43005 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.21■□□□□ 0.83
SLC1A1P43005 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.21■□□□□ 0.83
SLC1A1P43005 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC1A1P43005 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.21■□□□□ 0.83
SLC1A1P43005 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SLC1A1P43005 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.21■□□□□ 0.83
SLC1A1P43005 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC1A1P43005 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC1A1P43005 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.21■□□□□ 0.83
SLC1A1P43005 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SLC1A1P43005 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.21■□□□□ 0.83
SLC1A1P43005 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC1A1P43005 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC1A1P43005 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SLC1A1P43005 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC1A1P43005 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SLC1A1P43005 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
SLC1A1P43005 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.2■□□□□ 0.82
SLC1A1P43005 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.2■□□□□ 0.82
SLC1A1P43005 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SLC1A1P43005 FP475955.4-201ENST00000623131 1990 ntBASIC20.2■□□□□ 0.82
SLC1A1P43005 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SLC1A1P43005 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
SLC1A1P43005 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC1A1P43005 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SLC1A1P43005 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SLC1A1P43005 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC1A1P43005 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
SLC1A1P43005 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SLC1A1P43005 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SLC1A1P43005 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC1A1P43005 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.19■□□□□ 0.82
SLC1A1P43005 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC1A1P43005 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
SLC1A1P43005 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SLC1A1P43005 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SLC1A1P43005 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.19■□□□□ 0.82
SLC1A1P43005 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC1A1P43005 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC1A1P43005 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.19■□□□□ 0.82
SLC1A1P43005 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.19■□□□□ 0.82
SLC1A1P43005 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.19■□□□□ 0.82
SLC1A1P43005 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC1A1P43005 AC092666.2-201ENST00000613287 246 ntBASIC20.19■□□□□ 0.82
SLC1A1P43005 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC1A1P43005 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.19■□□□□ 0.82
SLC1A1P43005 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC1A1P43005 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SLC1A1P43005 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SLC1A1P43005 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
SLC1A1P43005 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC1A1P43005 IRX1P1-201ENST00000438849 1838 ntBASIC20.18■□□□□ 0.82
SLC1A1P43005 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.18■□□□□ 0.82
SLC1A1P43005 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
SLC1A1P43005 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SLC1A1P43005 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC1A1P43005 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SLC1A1P43005 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
SLC1A1P43005 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.18■□□□□ 0.82
SLC1A1P43005 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.18■□□□□ 0.82
SLC1A1P43005 POM121L13P-201ENST00000422362 380 ntBASIC20.18■□□□□ 0.82
SLC1A1P43005 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.18■□□□□ 0.82
SLC1A1P43005 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.18■□□□□ 0.82
SLC1A1P43005 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.18■□□□□ 0.82
SLC1A1P43005 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SLC1A1P43005 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC1A1P43005 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC1A1P43005 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SLC1A1P43005 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC1A1P43005 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.18■□□□□ 0.82
SLC1A1P43005 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC1A1P43005 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SLC1A1P43005 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SLC1A1P43005 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SLC1A1P43005 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
SLC1A1P43005 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC1A1P43005 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SLC1A1P43005 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms