Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
BDNFP23560 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.38■□□□□ 0.85
BDNFP23560 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
BDNFP23560 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BDNFP23560 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BDNFP23560 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.38■□□□□ 0.85
BDNFP23560 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BDNFP23560 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
BDNFP23560 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
BDNFP23560 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.38■□□□□ 0.85
BDNFP23560 AP005242.2-201ENST00000580065 1175 ntBASIC20.38■□□□□ 0.85
BDNFP23560 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
BDNFP23560 AC010947.1-201ENST00000623454 693 ntBASIC20.38■□□□□ 0.85
BDNFP23560 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
BDNFP23560 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
BDNFP23560 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
BDNFP23560 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.38■□□□□ 0.85
BDNFP23560 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.37■□□□□ 0.85
BDNFP23560 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
BDNFP23560 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.37■□□□□ 0.85
BDNFP23560 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.37■□□□□ 0.85
BDNFP23560 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BDNFP23560 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BDNFP23560 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BDNFP23560 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.37■□□□□ 0.85
BDNFP23560 TREX1-205ENST00000625293 1783 ntBASIC20.37■□□□□ 0.85
BDNFP23560 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.37■□□□□ 0.85
BDNFP23560 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
BDNFP23560 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.37■□□□□ 0.85
BDNFP23560 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.37■□□□□ 0.85
BDNFP23560 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.37■□□□□ 0.85
BDNFP23560 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.37■□□□□ 0.85
BDNFP23560 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
BDNFP23560 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
BDNFP23560 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BDNFP23560 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
BDNFP23560 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.36■□□□□ 0.85
BDNFP23560 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BDNFP23560 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.36■□□□□ 0.85
BDNFP23560 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BDNFP23560 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BDNFP23560 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.36■□□□□ 0.85
BDNFP23560 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.36■□□□□ 0.85
BDNFP23560 MFAP1P1-201ENST00000442257 1255 ntBASIC20.36■□□□□ 0.85
BDNFP23560 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.36■□□□□ 0.85
BDNFP23560 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.36■□□□□ 0.85
BDNFP23560 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.36■□□□□ 0.85
BDNFP23560 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.36■□□□□ 0.85
BDNFP23560 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.36■□□□□ 0.85
BDNFP23560 AC145285.6-201ENST00000604632 637 ntBASIC20.36■□□□□ 0.85
BDNFP23560 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
BDNFP23560 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
BDNFP23560 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
BDNFP23560 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BDNFP23560 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BDNFP23560 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BDNFP23560 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BDNFP23560 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 LINC01568-207ENST00000641790 1380 ntBASIC20.35■□□□□ 0.85
BDNFP23560 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 AFG3L1P-217ENST00000557444 2447 ntBASIC20.35■□□□□ 0.85
BDNFP23560 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
BDNFP23560 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.35■□□□□ 0.85
BDNFP23560 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.35■□□□□ 0.85
BDNFP23560 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.35■□□□□ 0.85
BDNFP23560 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
BDNFP23560 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.35■□□□□ 0.85
BDNFP23560 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.35■□□□□ 0.85
BDNFP23560 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.35■□□□□ 0.85
BDNFP23560 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
BDNFP23560 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BDNFP23560 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.34■□□□□ 0.85
BDNFP23560 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.34■□□□□ 0.85
BDNFP23560 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BDNFP23560 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.34■□□□□ 0.85
BDNFP23560 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
BDNFP23560 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BDNFP23560 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.34■□□□□ 0.85
BDNFP23560 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
BDNFP23560 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BDNFP23560 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.34■□□□□ 0.85
BDNFP23560 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
BDNFP23560 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.34■□□□□ 0.85
BDNFP23560 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.34■□□□□ 0.85
BDNFP23560 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BDNFP23560 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.34■□□□□ 0.85
BDNFP23560 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BDNFP23560 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.34■□□□□ 0.85
BDNFP23560 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.34■□□□□ 0.85
BDNFP23560 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.34■□□□□ 0.85
BDNFP23560 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BDNFP23560 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms