Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
MSH3P20585 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH3P20585 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.22■□□□□ 0.67
MSH3P20585 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
MSH3P20585 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 MIR718-201ENST00000390190 70 ntBASIC19.21■□□□□ 0.67
MSH3P20585 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.21■□□□□ 0.67
MSH3P20585 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.21■□□□□ 0.67
MSH3P20585 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.21■□□□□ 0.67
MSH3P20585 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 AC008550.1-201ENST00000511500 884 ntBASIC19.21■□□□□ 0.67
MSH3P20585 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.21■□□□□ 0.67
MSH3P20585 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.21■□□□□ 0.67
MSH3P20585 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.21■□□□□ 0.67
MSH3P20585 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.21■□□□□ 0.67
MSH3P20585 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 AF186192.3-201ENST00000583427 947 ntBASIC19.21■□□□□ 0.67
MSH3P20585 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.21■□□□□ 0.67
MSH3P20585 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSH3P20585 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
MSH3P20585 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSH3P20585 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
MSH3P20585 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH3P20585 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
MSH3P20585 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.2■□□□□ 0.66
MSH3P20585 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSH3P20585 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSH3P20585 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSH3P20585 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.2■□□□□ 0.66
MSH3P20585 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSH3P20585 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.2■□□□□ 0.66
MSH3P20585 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.2■□□□□ 0.66
MSH3P20585 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.2■□□□□ 0.66
MSH3P20585 AP001412.1-201ENST00000608405 714 ntBASIC19.2■□□□□ 0.66
MSH3P20585 AL353708.3-201ENST00000610272 989 ntBASIC19.2■□□□□ 0.66
MSH3P20585 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.2■□□□□ 0.66
MSH3P20585 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH3P20585 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH3P20585 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH3P20585 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
MSH3P20585 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
MSH3P20585 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
MSH3P20585 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.19■□□□□ 0.66
MSH3P20585 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 RPS2P55-201ENST00000397318 883 ntBASIC19.19■□□□□ 0.66
MSH3P20585 NIFKP9-201ENST00000419265 221 ntBASIC19.19■□□□□ 0.66
MSH3P20585 AC107956.1-201ENST00000494359 873 ntBASIC19.19■□□□□ 0.66
MSH3P20585 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.19■□□□□ 0.66
MSH3P20585 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.19■□□□□ 0.66
MSH3P20585 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.19■□□□□ 0.66
MSH3P20585 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
MSH3P20585 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.19■□□□□ 0.66
MSH3P20585 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.19■□□□□ 0.66
MSH3P20585 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
MSH3P20585 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.19■□□□□ 0.66
MSH3P20585 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.19■□□□□ 0.66
MSH3P20585 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.19■□□□□ 0.66
MSH3P20585 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH3P20585 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.18■□□□□ 0.66
MSH3P20585 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.18■□□□□ 0.66
MSH3P20585 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.18■□□□□ 0.66
MSH3P20585 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 AC012618.2-201ENST00000428058 849 ntBASIC19.18■□□□□ 0.66
MSH3P20585 KSR1P1-201ENST00000446298 240 ntBASIC19.18■□□□□ 0.66
MSH3P20585 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.18■□□□□ 0.66
MSH3P20585 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.18■□□□□ 0.66
MSH3P20585 AC073195.1-201ENST00000607241 877 ntBASIC19.18■□□□□ 0.66
MSH3P20585 HLA-A-209ENST00000638375 975 ntBASIC19.18■□□□□ 0.66
MSH3P20585 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
MSH3P20585 BX323043.1-201ENST00000641006 1765 ntBASIC19.18■□□□□ 0.66
MSH3P20585 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms