Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A1P02462 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL4A1P02462 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC23.69■■□□□ 1.38
COL4A1P02462 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
COL4A1P02462 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC23.69■■□□□ 1.38
COL4A1P02462 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL4A1P02462 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC23.69■■□□□ 1.38
COL4A1P02462 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC23.69■■□□□ 1.38
COL4A1P02462 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC23.69■■□□□ 1.38
COL4A1P02462 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC23.69■■□□□ 1.38
COL4A1P02462 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
COL4A1P02462 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC23.69■■□□□ 1.38
COL4A1P02462 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL4A1P02462 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
COL4A1P02462 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
COL4A1P02462 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL4A1P02462 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC23.69■■□□□ 1.38
COL4A1P02462 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A1P02462 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
COL4A1P02462 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A1P02462 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A1P02462 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A1P02462 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
COL4A1P02462 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A1P02462 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC23.68■■□□□ 1.38
COL4A1P02462 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC23.68■■□□□ 1.38
COL4A1P02462 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC23.68■■□□□ 1.38
COL4A1P02462 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
COL4A1P02462 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A1P02462 LBX2-AS1-202ENST00000603175 2083 ntBASIC23.68■■□□□ 1.38
COL4A1P02462 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC23.68■■□□□ 1.38
COL4A1P02462 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC23.68■■□□□ 1.38
COL4A1P02462 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A1P02462 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL4A1P02462 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
COL4A1P02462 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC23.67■■□□□ 1.38
COL4A1P02462 SNX5-210ENST00000481323 562 ntTSL 3 BASIC23.67■■□□□ 1.38
COL4A1P02462 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC23.67■■□□□ 1.38
COL4A1P02462 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC23.67■■□□□ 1.38
COL4A1P02462 WDR88-203ENST00000592765 651 ntTSL 5 BASIC23.67■■□□□ 1.38
COL4A1P02462 AC091076.1-201ENST00000610741 619 ntBASIC23.67■■□□□ 1.38
COL4A1P02462 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.67■■□□□ 1.38
COL4A1P02462 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A1P02462 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
COL4A1P02462 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A1P02462 ZNF815P-204ENST00000434898 1737 ntBASIC23.67■■□□□ 1.38
COL4A1P02462 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
COL4A1P02462 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC23.67■■□□□ 1.38
COL4A1P02462 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC23.67■■□□□ 1.38
COL4A1P02462 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A1P02462 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A1P02462 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A1P02462 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A1P02462 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL4A1P02462 VENTXP5-201ENST00000523979 775 ntBASIC23.67■■□□□ 1.38
COL4A1P02462 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC23.66■■□□□ 1.38
COL4A1P02462 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC23.66■■□□□ 1.38
COL4A1P02462 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.66■■□□□ 1.38
COL4A1P02462 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.66■■□□□ 1.38
COL4A1P02462 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC23.66■■□□□ 1.38
COL4A1P02462 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A1P02462 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC23.66■■□□□ 1.38
COL4A1P02462 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A1P02462 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A1P02462 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A1P02462 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A1P02462 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A1P02462 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A1P02462 GCSHP2-201ENST00000560971 527 ntBASIC23.66■■□□□ 1.38
COL4A1P02462 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC23.66■■□□□ 1.38
COL4A1P02462 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC23.66■■□□□ 1.38
COL4A1P02462 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC23.66■■□□□ 1.38
COL4A1P02462 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC23.66■■□□□ 1.38
COL4A1P02462 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A1P02462 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.66■■□□□ 1.38
COL4A1P02462 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC23.66■■□□□ 1.38
COL4A1P02462 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC23.66■■□□□ 1.38
COL4A1P02462 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL4A1P02462 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC23.65■■□□□ 1.38
COL4A1P02462 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 PTK2-216ENST00000519881 863 ntTSL 3 BASIC23.65■■□□□ 1.38
COL4A1P02462 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 CR769767.2-201ENST00000622735 460 ntBASIC23.65■■□□□ 1.38
COL4A1P02462 AC093458.2-201ENST00000623150 629 ntBASIC23.65■■□□□ 1.38
COL4A1P02462 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL4A1P02462 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
COL4A1P02462 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL4A1P02462 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL4A1P02462 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC23.64■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms