Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.67■□□□□ 0.58
CLDN9O95484 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
CLDN9O95484 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.67■□□□□ 0.58
CLDN9O95484 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN9O95484 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.67■□□□□ 0.58
CLDN9O95484 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN9O95484 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CLDN9O95484 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.67■□□□□ 0.58
CLDN9O95484 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN9O95484 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN9O95484 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN9O95484 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.67■□□□□ 0.58
CLDN9O95484 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.67■□□□□ 0.58
CLDN9O95484 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN9O95484 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CLDN9O95484 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN9O95484 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CLDN9O95484 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN9O95484 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
CLDN9O95484 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.67■□□□□ 0.58
CLDN9O95484 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CLDN9O95484 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.67■□□□□ 0.58
CLDN9O95484 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.66■□□□□ 0.58
CLDN9O95484 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.66■□□□□ 0.58
CLDN9O95484 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLDN9O95484 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CLDN9O95484 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.66■□□□□ 0.58
CLDN9O95484 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.66■□□□□ 0.58
CLDN9O95484 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.66■□□□□ 0.58
CLDN9O95484 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.66■□□□□ 0.58
CLDN9O95484 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.66■□□□□ 0.58
CLDN9O95484 AP003097.1-201ENST00000530657 1135 ntBASIC18.66■□□□□ 0.58
CLDN9O95484 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.66■□□□□ 0.58
CLDN9O95484 AC004408.2-201ENST00000623613 2777 ntBASIC18.66■□□□□ 0.58
CLDN9O95484 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.66■□□□□ 0.58
CLDN9O95484 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.66■□□□□ 0.58
CLDN9O95484 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN9O95484 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.65■□□□□ 0.58
CLDN9O95484 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
CLDN9O95484 AL020996.1-203ENST00000536896 2307 ntBASIC18.65■□□□□ 0.58
CLDN9O95484 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.65■□□□□ 0.58
CLDN9O95484 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 KRT17P3-201ENST00000420566 1262 ntBASIC18.65■□□□□ 0.58
CLDN9O95484 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.65■□□□□ 0.58
CLDN9O95484 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
CLDN9O95484 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.65■□□□□ 0.58
CLDN9O95484 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.65■□□□□ 0.58
CLDN9O95484 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CLDN9O95484 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.65■□□□□ 0.58
CLDN9O95484 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.65■□□□□ 0.58
CLDN9O95484 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CLDN9O95484 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLDN9O95484 NBPF21P-201ENST00000425093 1451 ntBASIC18.65■□□□□ 0.58
CLDN9O95484 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.65■□□□□ 0.58
CLDN9O95484 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
CLDN9O95484 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CLDN9O95484 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.58
CLDN9O95484 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CLDN9O95484 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CLDN9O95484 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CLDN9O95484 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.64■□□□□ 0.57
CLDN9O95484 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
CLDN9O95484 AC026366.1-201ENST00000488803 879 ntBASIC18.64■□□□□ 0.57
CLDN9O95484 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.64■□□□□ 0.57
CLDN9O95484 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.64■□□□□ 0.57
CLDN9O95484 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms